| Protein: | XPA |
| Organism: | Homo sapiens |
| Length: | 273 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XPA.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-95 | [1..273] | [1..273] |
|
|
9.0E-95 | [1..273] | [1..273] |
|
|
2.0E-94 | [1..273] | [1..273] |
|
|
6.0E-92 | [1..273] | [1..273] |
|
|
2.0E-91 | [1..273] | [1..273] |
|
|
1.0E-89 | [2..273] | [4..272] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MAAADGALPE AAALEQPAEL PASVRASIER KRQRALMLRQ ARLAARPYSA TAAAATGGMA 60
61 NV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [63-273] |
1 11 21 31 41 51
| | | | | |
1 KAAPKIIDTG GGFILEEEEE EEQKIGKVVH QPGPVMEFDY VICEECGKEF MDSYLMNHFD 60
61 LPTCDNCRDA DDKHKLITKT EAKQEYLLKD CDLEKREPPL KFIVKKNPHH SQWGDMKLYL 120
121 KLQIVKRSLE VWGSQEALEE AKEVRQENRE KMKQKKFDKK VKELRRAVRS SVWKRETIVH 180
181 QHEYGPEENL EDDMYRKTCT MCGHELTYEK M
|
| Detection Method: | |
| Confidence: | 45.522879 |
| Match: | 1xpaA |
| Description: | SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.3712591616364 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20400142735918 | bayes_pls_golite062009 |
| DNA binding | 2.18702281581791 | bayes_pls_golite062009 |
| nucleic acid binding | 2.04270847321412 | bayes_pls_golite062009 |
| transcription factor activity | 1.44182975349714 | bayes_pls_golite062009 |
| protein binding | 1.14219782236887 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.71242082351425 | bayes_pls_golite062009 |
| transcription activator activity | 0.612819891085 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.610805977602876 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.51536225088963 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 0.44426709732278 | bayes_pls_golite062009 |
| transcription factor binding | 0.40850395411512 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.37925266318051 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.280685154942276 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
