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Protein Overview: gi|123994259, gi...

General Information:
Name(s) found: gi|60654675 [NCBI NR]
gi|60654673 [NCBI NR]
gi|168267248 [NCBI NR]
gi|124126957 [NCBI NR]
gi|123994259 [NCBI NR]
Description(s) found:
Found 6 descriptions.
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  • gi|60654675|gb|AAX31902.1| ring finger protein 10 [synthetic construct] [NCBI NR]
  • gi|60654673|gb|AAX31901.1| ring finger protein 10 [synthetic construct] [NCBI NR]
  • gi|168267248|dbj|BAG09680.1| RING finger protein 10 [synthetic construct] [NCBI NR]
  • gi|124126957|gb|ABM92251.1| ring finger protein 10 [synthetic construct] [NCBI NR]
  • gi|123994259|gb|ABM84731.1| ring finger protein 10 [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 811 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSSPNAAA TASDMDKNSG SNSSSASSGS SKGQQPPRSA SAGPAGESKP KSDGKNSSGS  60
   61 KRYNRKRELS YPKNESFNNQ SRRSSSQKSK TFNKMPPQRG GGSSKLFSSS FNGGRRDEVA 120
  121 EAQRAEFSPA QFSGPKKINL NHLLNFTFEP RGQTGHFEGS GHGSWGKRNK WGHKPFNKEL 180
  181 FLQANCQFVV SEDQDYTAHF ADPDTLVNWD FVEQVRICSH EVPSCPICLY PPTAAKITRC 240
  241 GHIFCWACIL HYLSLSEKTW SKCPICYSSV HKKDLKSVVA TESHQYVVGD TITMQLMKRE 300
  301 KGVLVALPKS KWMNVDHPIH LGDEQHSQYS KLLLASKEQV LHRVVLEEKV ALEQQLAEEK 360
  361 HTPESCFIEA AIQELKTREE ALSGLAGSRR EVTGVVAALE QLVLMAPLAK ESVFQPRKGV 420
  421 LEYLSAFDEE TTEVCSLDTP SRPLALPLVE EEEAVSEPEP EGLPEACDDL ELADDNLKEG 480
  481 TICTESSQQE PITKSGFTRL SSSPCYYFYQ AEDGQHMFLH PVNVRCLVRE YGSLERSPEK 540
  541 ISATVVEIAG YSMSEDVRQR HRYLSHLPLT CEFSICELAL QPPVVSKETL EMFSDDIEKR 600
  601 KRQRQKKARE ERRRERRIEI EENKKQGKYP EVHIPLENLQ QFPAFNSYTC SSDSALGPTS 660
  661 TEGHGALSIS PLSRSPGSHA DFLLTPLSPT ASQGSPSFCV GSLEEDSPFP SFAQMLRVGK 720
  721 AKADVWPKTA PKKDENSLVP PAPVDSDGES DNSDRVPVPS FQNSFSQAIE AAFMKLDTPA 780
  781 TSDPLSEEKG GKKRKKQKQK LLFSTSVVHT K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] MSA 3.728987 View MSA. No confident structure predictions are available.
    2 View Details [208..335] PSI-BLAST 13.0 RAG1 DIMERIZATION DOMAIN
    3 View Details [336..502] MSA 2.619994 View MSA. No confident structure predictions are available.
    4 View Details [503..626] MSA 1.189984 View MSA. No confident structure predictions are available.
    5 View Details [627..811] FFAS03 1.17 No description for 2fj7I was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • protein binding
    		•  2.64803540957326 bayes_pls_golite062009
  • binding
    		•  2.14721962003828 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.68475305605912 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.14817467304431 bayes_pls_golite062009
  • DNA binding
    		•  1.04821660471647 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.628952571387495 bayes_pls_golite062009
  • transcription activator activity
    		•  0.546784009980947 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.491915833175877 bayes_pls_golite062009
  • chromatin binding
    		•  0.48807894940058 bayes_pls_golite062009
  • ligase activity
    		•  0.34187399168736 bayes_pls_golite062009
  • transcription factor activity
    		•  0.256724934540426 bayes_pls_golite062009
  • transcription factor binding
    		•  0.25479994691323 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.15369897412662 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.017536022609566 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle