| Protein: | RNF10 |
| Organism: | Homo sapiens |
| Length: | 811 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNF10.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..811] | [1..811] |
|
|
0.0 | [1..811] | [1..811] |
|
|
0.0 | [1..811] | [1..811] |
|
|
0.0 | [1..811] | [1..802] |
|
|
0.0 | [1..811] | [1..810] |
|
|
0.0 | [1..811] | [1..804] |
|
Region A: Residues: [1-207] |
1 11 21 31 41 51
| | | | | |
1 MPLSSPNAAA TASDMDKNSG SNSSSASSGS SKGQQPPRSA SAGPAGESKP KSDGKNSSGS 60
61 KRYNRKRELS YPKNESFNNQ SRRSSSQKSK TFNKMPPQRG GGSSKLFSSS FNGGRRDEVA 120
121 EAQRAEFSPA QFSGPKKINL NHLLNFTFEP RGQTGHFEGS GHGSWGKRNK WGHKPFNKEL 180
181 FLQANCQFVV SEDQDYTAHF ADPDTLV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [208-335] |
1 11 21 31 41 51
| | | | | |
1 NWDFVEQVRI CSHEVPSCPI CLYPPTAAKI TRCGHIFCWA CILHYLSLSE KTWSKCPICY 60
61 SSVHKKDLKS VVATESHQYV VGDTITMQLM KREKGVLVAL PKSKWMNVDH PIHLGDEQHS 120
121 QYSKLLLA
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1rmdA |
| Description: | RAG1 DIMERIZATION DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.64803540957326 | bayes_pls_golite062009 |
| binding | 2.14721962003828 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68475305605912 | bayes_pls_golite062009 |
| nucleic acid binding | 1.14817467304431 | bayes_pls_golite062009 |
| DNA binding | 1.04821660471647 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.628952571387495 | bayes_pls_golite062009 |
| transcription activator activity | 0.546784009980947 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.491915833175877 | bayes_pls_golite062009 |
| chromatin binding | 0.48807894940058 | bayes_pls_golite062009 |
| ligase activity | 0.34187399168736 | bayes_pls_golite062009 |
| transcription factor activity | 0.256724934540426 | bayes_pls_golite062009 |
| transcription factor binding | 0.25479994691323 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.15369897412662 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.017536022609566 | bayes_pls_golite062009 |
|
Region A: Residues: [336-502] |
1 11 21 31 41 51
| | | | | |
1 SKEQVLHRVV LEEKVALEQQ LAEEKHTPES CFIEAAIQEL KTREEALSGL AGSRREVTGV 60
61 VAALEQLVLM APLAKESVFQ PRKGVLEYLS AFDEETTEVC SLDTPSRPLA LPLVEEEEAV 120
121 SEPEPEGLPE ACDDLELADD NLKEGTICTE SSQQEPITKS GFTRLSS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [503-626] |
1 11 21 31 41 51
| | | | | |
1 SPCYYFYQAE DGQHMFLHPV NVRCLVREYG SLERSPEKIS ATVVEIAGYS MSEDVRQRHR 60
61 YLSHLPLTCE FSICELALQP PVVSKETLEM FSDDIEKRKR QRQKKAREER RRERRIEIEE 120
121 NKKQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [627-811] |
1 11 21 31 41 51
| | | | | |
1 GKYPEVHIPL ENLQQFPAFN SYTCSSDSAL GPTSTEGHGA LSISPLSRSP GSHADFLLTP 60
61 LSPTASQGSP SFCVGSLEED SPFPSFAQML RVGKAKADVW PKTAPKKDEN SLVPPAPVDS 120
121 DGESDNSDRV PVPSFQNSFS QAIEAAFMKL DTPATSDPLS EEKGGKKRKK QKQKLLFSTS 180
181 VVHTK
|
| Detection Method: | |
| Confidence: | 1.17 |
| Match: | 2fj7I |
| Description: | No description for 2fj7I was found. |
