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Protein Overview: Y3797_VIBC3

General Information:
Name(s) found: Y3797_VIBC3 [Swiss-Prot]
Description(s) found:
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  • gi|75828208|ref|ZP_00757643.1| COG2003: DNA repair proteins [Vibrio cholerae O395] [NCBI NR]
  • gi|227116614|ref|YP_002818510.1| DNA repair protein RadC [Vibrio cholerae O395] [NCBI NR]
  • gi|227012064|gb|ACP08274.1| DNA repair protein RadC [Vibrio cholerae O395] [NCBI NR]
  • gi|172047481|sp|A5F402.1|RADC_VIBC3 RecName: Full=DNA repair protein radC homolog [NCBI NR]
  • gi|147674401|ref|YP_001218476.1| DNA repair protein RadC [Vibrio cholerae O395] [NCBI NR]
  • gi|146316284|gb|ABQ20823.1| DNA repair protein RadC [Vibrio cholerae O395] [NCBI NR]
  • UPF0758 protein VC0395_A2597/VC395_0249 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=VC0395_A2597 PE=3 SV=1 [Swiss-Prot]
  • DNA repair protein radC homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=radC PE=3 SV=1 [Swiss-Prot]
  • COG2003: DNA repair proteins [Vibrio cholerae O395] [nr-271106-contam.fasta]
    • Organism: Vibrio cholerae O395
    Length: 224 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKQLPTES MPREKLLQRG PQSLSDAELL AIFLRTGTQG MNVLALADLL LRDFGSLRAL  60
   61 FCASKEQFCR HKGLGEAKFV QLQAVLEMTQ RYLAETLKRG DALTSPQQTK LYLSSVLRDR 120
  121 QREAFYILFL DNQHRVIRDE ILFEGTIDAA SVYPREVVKR ALHHNAAAVI LAHNHPSGVA 180
  181 EPSQADRRIT DRLRDALGLV EIRVLDHFVV GDGEVVSFAE RGWI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] PSI-BLAST 9.0 Crystal Structure Of Archaeal Xpf/Mus81 Homolog, Hef From Pyrococcus Furiosus, Helix-hairpin-helix Domain
    2 View Details [83..224] PSI-BLAST 40.69897 No description for 2qlcA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • deoxyribonuclease activity
    		•  1.94644856236502 bayes_pls_golite062009
  • catalytic activity
    		•  1.9303555688427 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  1.88989456615424 bayes_pls_golite062009
  • DNA helicase activity
    		•  1.83146987493465 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  1.7774844748266 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66546843102205 bayes_pls_golite062009
  • excinuclease ABC activity
    		•  1.39254708050007 bayes_pls_golite062009
  • helicase activity
    		•  1.14079869095094 bayes_pls_golite062009
  • damaged DNA binding
    		•  0.72918713704553 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.44369712964701 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.36890004800241 bayes_pls_golite062009
  • nuclease activity
    		•  0.32594639151447 bayes_pls_golite062009
  • endonuclease activity
    		•  0.287519901768059 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.15944437485539 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0669727336969201 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.05756449780621 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0572628370858399 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0554315973046002 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle