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Protein Overview: CWC24_SCHPO

General Information:
Name(s) found: CWC24_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf24 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 533 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKNLNINQ ASGSKINTEL AVPIFQSRRR HRPRQGLKRK KGFKRDDDSG GSSESSNEDM  60
   61 RDNIPIVSGR KKTVRLNRLQ RESEQFENSA LKDINVEYQS NLSATGESVN TTTVSAINED 120
  121 TREVILGRPS PKLANQSTLP TELFQSQNDY SRFLPKRKDF EKKSQVGPVL SSNASTVRMN 180
  181 TIIDYQPDVC KDYKLTGYCG YGDTCKFLHM REDYKAGWQL DREWDSVQEK YKKGAKLEEG 240
  241 MVKNEKKEDI PFVCLICKKD YRSPIATTCG HHFCEQCAIT RYRKTPTCIQ CGADTKGLFS 300
  301 VDKNFDRLLK NRKSKNDEAV KQKVGGFESN NSATTEVSER KDREASFQGF ADTLAKPNTS 360
  361 AQQKMPSLGD NSNTIISKYF IREITESNIV HFKRLVRVVL EASYSDKFYR LVLKNPDYAR 420
  421 IATFEDKFVG AISSLVAEDN SLYVTVLCVL APYRCLGIGS LLIDHVKKTA INNNIDRISL 480
  481 HVQTTNESVI KWYTAHGFKI VKQINDFYRR LENKSAFYMV CPLSAHNNII SNH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] deduced N/A No confident structure predictions are available.
    2 View Details [139..229] FFAS03 1.49 Solution Structure of the Zinc-finger domain in KIAA1064 protein
    3 View Details [230..363] PSI-BLAST 13.09691 RAG1 DIMERIZATION DOMAIN
    4 View Details [364..425] deduced N/A No confident structure predictions are available.
    5 View Details [426..533] PSI-BLAST 15.221849 No description for 2ob0A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  5.78506998502716 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  5.55686022186257 bayes_pls_golite062009
    		• 4.77196423114965 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  4.59153177011595 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  3.07217714843839 bayes_pls_golite062009
  • RNA binding
    		•  3.04658201081989 bayes_pls_golite062009
  • snRNA binding
    		•  2.60432246247067 bayes_pls_golite062009
  • U1 snRNA binding
    		•  2.4012085357866 bayes_pls_golite062009
  • ligase activity
    		•  2.30828657077565 bayes_pls_golite062009
  • binding
    		•  2.19426901055464 bayes_pls_golite062009
  • protein binding
    		•  1.73461977726143 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.62076236255768 bayes_pls_golite062009
  • mRNA binding
    		•  1.30742677372942 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.22180889694654 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  1.2126425713931 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  1.03469202541773 bayes_pls_golite062009
  • DNA binding
    		•  1.00346149950987 bayes_pls_golite062009
  • chromatin binding
    		•  0.89589330553881 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  0.50197530717959 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.47352407708364 bayes_pls_golite062009
  • transcription factor binding
    		•  0.39685947299825 bayes_pls_golite062009
  • transcription factor activity
    		•  0.382098789505496 bayes_pls_golite062009
  • ubiquitin thiolesterase activity
    		•  0.265769062717221 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.240825841910931 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.0129353639725593 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle