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Protein Overview: gi|116805330, gi...

General Information:
Name(s) found: gi|55666333 [NCBI NR]
gi|55666222 [NCBI NR]
gi|55663915 [NCBI NR]
gi|116805330 [NCBI NR]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • gi|55666333|emb|CAH72739.1| potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 [Homo sapiens] [NCBI NR]
  • gi|55666222|emb|CAH71911.1| potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 [Homo sapiens] [NCBI NR]
  • gi|55663915|emb|CAH71151.1| potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 [Homo sapiens] [NCBI NR]
  • gi|116805330|ref|NP_002240.3| small conductance calcium-activated potassium channel protein 3 isoform a [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 731 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSGHFHDS GVGDLDEDPK CPCPSSGDEQ QQQQQQQQQQ QPPPPAPPAA PQQPLGPSLQ  60
   61 PQPPQLQQQQ QQQQQQQQQQ PPHPLSQLAQ LQSQPVHPGL LHSSPTAFRA PPSSNSTAIL 120
  121 HPSSRQGSQL NLNDHLLGHS PSSTATSGPG GGSRHRQASP LVHRRDSNPF TEIAMSSCKY 180
  181 SGGVMKPLSR LSASRRNLIE AETEGQPLQL FSPSNPPEIV ISSREDNHAH QTLLHHPNAT 240
  241 HNHQHAGTTA SSTTFPKANK RKNQNIGYKL GHRRALFEKR KRLSDYALIF GMFGIVVMVI 300
  301 ETELSWGLYS KDSMFSLALK CLISLSTIIL LGLIIAYHTR EVQLFVIDNG ADDWRIAMTY 360
  361 ERILYISLEM LVCAIHPIPG EYKFFWTARL AFSYTPSRAE ADVDIILSIP MFLRLYLIAR 420
  421 VMLLHSKLFT DASSRSIGAL NKINFNTRFV MKTLMTICPG TVLLVFSISL WIIAAWTVRV 480
  481 CERYHDQQDV TSNFLGAMWL ISITFLSIGY GDMVPHTYCG KGVCLLTGIM GAGCTALVVA 540
  541 VVARKLELTK AEKHVHNFMM DTQLTKRIKN AAANVLRETW LIYKHTKLLK KIDHAKVRKH 600
  601 QRKFLQAIHQ LRSVKMEQRK LSDQANTLVD LSKMQNVMYD LITELNDRSE DLEKQIGSLE 660
  661 SKLEHLTASF NSLPLLIADT LRQQQQQLLS AIIEARGVSV AVGTTHTPIS DSPIGVSSTS 720
  721 FPTPYTSSSS C

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] PSI-BLAST 7.39794 No description for 1y0fA was found.
    2 View Details [258..316] Pfam 23.221849 No description for PF03530.5 was found. No confident structure predictions are available.
    3 View Details [317..560] PSI-BLAST 14.69897 Potassium channel KVAP
    4 View Details [561..644] PSI-BLAST 20.045757 Small-conductance potassium channel
    5 View Details [645..731] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • voltage-gated potassium channel activity
    		•  12.0716262326447 bayes_pls_golite062009
  • potassium channel activity
    		•  12.0564503263181 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  11.2479281243224 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  11.0164314117387 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  10.9923023836994 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  9.85051068330727 bayes_pls_golite062009
  • cation channel activity
    		•  9.62064031772276 bayes_pls_golite062009
  • ion channel activity
    		•  8.91395130684665 bayes_pls_golite062009
  • gated channel activity
    		•  8.84587381436962 bayes_pls_golite062009
  • channel activity
    		•  8.68489845295557 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  8.68489845295557 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  8.67927944890782 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  5.74511802205447 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  5.74511802205447 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  5.13805155650973 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  5.0997110076666 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  5.04374327766634 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  4.64120459994573 bayes_pls_golite062009
  • transporter activity
    		•  2.93091397928047 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.82224868778929 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.79688978937497 bayes_pls_golite062009
    4
    Term Confidence Notes
  • potassium channel activity
    		•  12.9154216859515 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  10.690117627191 bayes_pls_golite062009
  • cation channel activity
    		•  10.4729582700993 bayes_pls_golite062009
  • ion channel activity
    		•  9.76420146980976 bayes_pls_golite062009
  • gated channel activity
    		•  9.69845089208228 bayes_pls_golite062009
  • channel activity
    		•  9.53251272468341 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  9.53251272468341 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  9.52766364291262 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  5.94944590079392 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  5.84582254185274 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  5.42471865207378 bayes_pls_golite062009
  • calcium-activated potassium channel activity
    		•  4.85096783740785 bayes_pls_golite062009
  • ion gated channel activity
    		•  3.66857233866209 bayes_pls_golite062009
  • transporter activity
    		•  3.65156094985283 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.56349914685586 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5594499564237 bayes_pls_golite062009
  • small conductance calcium-activated potassium channel activity
    		•  3.44162773824006 bayes_pls_golite062009
  • calcium activated cation channel activity
    		•  3.35031790098165 bayes_pls_golite062009
  • protein binding
    		•  1.61033690476624 bayes_pls_golite062009
  • binding
    		•  1.32969330984971 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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