Protein Overview: RD23B_ARATH

General Information:
Name(s) found:	RD23B_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|73620991\|sp\|Q84L33.3\|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName: Full=RAD23-like protein 1; Short=AtRAD23-1 [NCBI NR] gi\|30699439\|ref\|NP_850982.1\| RAD23; damaged DNA binding [Arabidopsis thaliana] [NCBI NR] gi\|21593616\|gb\|AAM65583.1\| DNA repair protein RAD23, putative [Arabidopsis thaliana] [NCBI NR] Ubiquitin receptor RAD23b OS=Arabidopsis thaliana GN=RAD23B PE=1 SV=3 [Swiss-Prot] Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3 [Swiss-Prot] DNA repair protein RAD23, putative [Arabidopsis thaliana]gi\|30699439\|ref\|NP_850982.1\| DNA repair protein RAD23, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Splice Isoform 1 of Putative DNA repair protein RAD23-1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: RAD23 \| RAD23; damaged DNA binding \| chr1:29977299-29980025 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] DNA repair protein RAD23, putative [Arabidopsis thaliana] [nr-271106-contam.fasta] RAD23; damaged DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta] Putative DNA repair protein RAD23-1 (RAD23-like protein 1) (AtRAD23-1) [nr-271106-contam.fasta] \| Symbols: RAD23, RAD23B \| Rad23 UV excision repair protein family \| chr1:29972406-29975132 REVERSE LENGTH=371 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	371 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA]
Biological Process:	proteasomal ubiquitin-dependent protein catabolic process [IEA] base-excision repair [ISS] protein modification process [IEA] nucleotide-excision repair [IEA]
Molecular Function:	proteasome binding [IDA] ubiquitin binding [IDA] damaged DNA binding [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV  60
   61 ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT TSSTKPAAPS TTQSSPVPAS 120
  121 PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE 180
  181 RAVDYLYSGI PQTAEVAVPV PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD 240
  241 LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY 300
  301 EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN 360
  361 YLLENSGDFE D

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
damaged DNA binding	4.47463096529128	bayes_pls_golite062009
peptidase activity	4.11397638448668	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	3.93085931991298	bayes_pls_golite062009
small conjugating protein ligase activity	3.71144418714309	bayes_pls_golite062009
ubiquitin-protein ligase activity	3.30801071565148	bayes_pls_golite062009
binding	2.786655943372	bayes_pls_golite062009
hydrolase activity	2.77871378503369	bayes_pls_golite062009
acid-amino acid ligase activity	2.72499875710239	bayes_pls_golite062009
protein tag	2.15059229834935	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	2.00465244189638	bayes_pls_golite062009
protein binding	1.86841453215444	bayes_pls_golite062009
transcription regulator activity	1.42747465816672	bayes_pls_golite062009
nucleic acid binding	1.32707653701567	bayes_pls_golite062009
DNA binding	1.22622447288034	bayes_pls_golite062009
SUMO ligase activity	0.80391127659342	bayes_pls_golite062009
small conjugating protein-specific protease activity	0.59805675560068	bayes_pls_golite062009
structure-specific DNA binding	0.570143717979967	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.536856055841234	bayes_pls_golite062009
kinase activity	0.506057697290914	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.410719674374641	bayes_pls_golite062009
ubiquitin-specific protease activity	0.387487703339719	bayes_pls_golite062009
cytoskeletal protein binding	0.366426020658587	bayes_pls_golite062009
protein kinase activity	0.325253662829604	bayes_pls_golite062009
single-stranded DNA binding	0.249928925871521	bayes_pls_golite062009
transferase activity	0.236208643697075	bayes_pls_golite062009
polyubiquitin binding	0.126322128629172	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..371]	PSI-BLAST	66.09691	Structure of the DNA repair protein hHR23a

Protein Overview: RD23B_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: