| Protein: | RD23B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 371 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RD23B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
309.0 | [0..1] | [371..1] |
|
Region A: Residues: [1-371] |
1 11 21 31 41 51
| | | | | |
1 MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV 60
61 ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT TSSTKPAAPS TTQSSPVPAS 120
121 PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE 180
181 RAVDYLYSGI PQTAEVAVPV PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD 240
241 LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY 300
301 EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN 360
361 YLLENSGDFE D
|
| Detection Method: |  |
| Confidence: | 66.09691 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| damaged DNA binding | 4.47463096529128 | bayes_pls_golite062009 |
| peptidase activity | 4.11397638448668 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.93085931991298 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.71144418714309 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.30801071565148 | bayes_pls_golite062009 |
| binding | 2.786655943372 | bayes_pls_golite062009 |
| hydrolase activity | 2.77871378503369 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.72499875710239 | bayes_pls_golite062009 |
| protein tag | 2.15059229834935 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 2.00465244189638 | bayes_pls_golite062009 |
| protein binding | 1.86841453215444 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42747465816672 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32707653701567 | bayes_pls_golite062009 |
| DNA binding | 1.22622447288034 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.59805675560068 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.570143717979967 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
| kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.387487703339719 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.366426020658587 | bayes_pls_golite062009 |
| protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.249928925871521 | bayes_pls_golite062009 |
| transferase activity | 0.236208643697075 | bayes_pls_golite062009 |
| polyubiquitin binding | 0.126322128629172 | bayes_pls_golite062009 |
