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Protein Overview: gi|218930372, gi...

General Information:
Name(s) found: gi|218930372 [NCBI NR]
gi|16123504 [NCBI NR]
gi|15981281 [NCBI NR]
gi|115348983 [NCBI NR]
Description(s) found:
Found 7 descriptions.
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  • gi|218930372|ref|YP_002348247.1| DNA mismatch repair protein MutS [Yersinia pestis CO92] [NCBI NR]
  • gi|16123504|ref|NP_406817.1| DNA mismatch repair protein [Yersinia pestis CO92] [NCBI NR]
  • gi|15981281|emb|CAC92584.1| DNA mismatch repair protein MutS [Yersinia pestis CO92] [NCBI NR]
  • gi|115348983|emb|CAL21943.1| DNA mismatch repair protein MutS [Yersinia pestis CO92] [NCBI NR]
    • Organism: Yersinia pestis CO92
    Length: 851 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNDKLDSH TPMMQQYLRL KAQHPEILLF YRMGDFYELF YSDAKRASQL LDISLTKRGA  60
   61 SAGEPIPMAG VPYHSIENYL AKLVQLGESA AICEQIGDPA TSKGPVERKV VRIVTPGTIS 120
  121 DEALLQERQD NLLAAIWQDA KGFGYATLDI SSGRFRVAEP ADLETMAAEL QRTNPAELLY 180
  181 PENFEPMSLI EHRHGLRRRP LWEFELDTAK QQLNLQFGTR DLIGFGVEQA HLALRAAGCL 240
  241 LQYVKDTQRT SLPHIRGLTM ERQQDGIIMD AATRRNLELT QNLSGGSENT LAAILDCSVT 300
  301 PMGSRMLKRW LHMPIRDIRV LTDRQQAIGG LQDIAAELQT PLRQVGDLER ILARLALRTA 360
  361 RPRDLARMRH AFQQLPEIHR LLQPIDVPHV QNLLSQVGQF DELQDLLERA IVETPPVLVR 420
  421 DGGVIASGYN AELDEWRALA DGATDYLDRL EIREREKLGL DTLKVGFNGV HGYYIQVSRG 480
  481 QSHLVPIHYV RRQTLKNAER YIIPELKEYE DKVLTSKGKA LAIEKGLYEE IFDLLLPHLP 540
  541 ELQLSANALA ELDVLANLAE RAETLNYSCP TLSDKPGIKI MGGRHPVVEQ VLKEPFISNP 600
  601 LTLSPQRRML IITGPNMGGK STYMRQTALI VLLAHLGSYV PADQATIGPI DRIFTRVGAA 660
  661 DDLASGRSTF MVEMTETANI LHNATEQSLV LMDEIGRGTS TYDGLSLAWA CAENLASRIK 720
  721 AMTLFATHYF ELTTLPEKME GVVNVHLDAL EHGETIAFMH SVQEGAASKS YGLAVAALAG 780
  781 VPRDVIKRAR QKLKELESLS NNAAASTIDG SQMTLLNEEI PPAVEALEAL DPDSLSPRQA 840
  841 LEWIYRLKNM V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..851] PSI-BLAST 1000.0 DNA repair protein MutS, domain III; DNA repair protein MutS, the C-terminal domain; DNA repair protein MutS, domain II; DNA repair protein MutS, domain I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • mismatched DNA binding
    		•  7.6300905919597 bayes_pls_golite062009
    		• 6.67853997762091 bayes_pls_golite062009
  • guanine/thymine mispair binding
    		•  6.45283004617788 bayes_pls_golite062009
  • DNA insertion or deletion binding
    		•  6.26024791706598 bayes_pls_golite062009
  • oxidized purine DNA binding
    		•  5.89391492251368 bayes_pls_golite062009
  • oxidized DNA binding
    		•  5.89391492251368 bayes_pls_golite062009
  • single guanine insertion binding
    		•  5.89391492251368 bayes_pls_golite062009
  • dinucleotide repeat insertion binding
    		•  5.18682154515498 bayes_pls_golite062009
  • single base insertion or deletion binding
    		•  5.15853852267378 bayes_pls_golite062009
  • single thymine insertion binding
    		•  4.26884084912691 bayes_pls_golite062009
  • dinucleotide insertion or deletion binding
    		•  4.09431251446007 bayes_pls_golite062009
  • loop DNA binding
    		•  3.13510929288157 bayes_pls_golite062009
  • mismatch repair complex binding
    		•  2.99730753457176 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  2.72462789867829 bayes_pls_golite062009
  • binding
    		•  2.4974940028864 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.10134737488849 bayes_pls_golite062009
  • double-strand/single-strand DNA junction binding
    		•  2.02697209084624 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.71882026185027 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • microtubule motor activity
    		•  1.6537049553461 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.2539059700735 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • motor activity
    		•  1.14667913749579 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.117585097627 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.08697924060619 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  1.08464552192299 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.91282941965371 bayes_pls_golite062009
  • DNA binding
    		•  0.702147676354075 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.568457189190858 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.500462538667228 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.287777990975748 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.26252931460003 bayes_pls_golite062009
  • protein binding
    		•  0.193768631623192 bayes_pls_golite062009
  • exodeoxyribonuclease V activity
    		•  0.185603938981231 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • actin binding
    		•  0.00482938540552702 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle