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Protein Overview: gi|29139464, gi|...

General Information:
Name(s) found: gi|29143828 [NCBI NR]
gi|29139464 [NCBI NR]
Description(s) found:
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  • gi|29143828|ref|NP_807170.1| primosome assembly protein PriA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29139464|gb|AAO71030.1| primosomal protein replication factor [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
  • primosomal protein replication factor [Salmonella enterica subsp. enterica serovar Typhi Ty2]gi|16762340|ref|NP_457957.1| primosomal protein replication factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18]gi|29139464|gb|AAO71030.1| primo [nrdb_11152004_Chlamydomonas]
  • primosomal protein replication factor [Salmonella enterica subsp. enterica serovar Typhi Ty2] [nr-271106-contam.fasta]
  • primosome assembly protein PriA [Salmonella enterica subsp. enterica serovar Typhi Ty2] [nr-271106-contam.fasta]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 732 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVAHVALPV PLPRTFDYLL PEGGVAKAGC RVRVPFGKQQ ERVGIVVSVS DHSELPLDEL  60
   61 KSVIEILDNE PIFSPSIWRL LLWAADYYHH PLGDVLFHAL PVLLRQGKPA SNAPLWYWFA 120
  121 TEEGQAVDIN SLKRSAKQQQ ALAALRQGKI WRYQVAELDF TDATLQTLRR KGLCELASET 180
  181 PAFTDWREHY AVAGERLRLN TEQATAVGAI HSASDGFSAW LLAGVTGSGK TEVYLSVLEN 240
  241 VLAQGKQALV MVPEIGLTPQ TIARFRERFN TPVEVLHSGL NDSERLSAWL KAKNGEAAIV 300
  301 IGTRSSLFTP FKNLGVIVID EEHDSSYKQQ EGWRYHARDL AVYRAHSEQI PIILGSATPA 360
  361 LETLCNVRQK KYRMLRLTRR AGNARPALQH VLDLKGQRLQ AGLAPALIAR MRQHLQADNQ 420
  421 VILFLNRRGF APALLCHDCG WIAECPRCDH YYTLHQAQHH LRCHHCDSQR PVPRQCPSCG 480
  481 STHMLPVGLG TEQLEQVLAP FFPGVPISRI DRDTTSRKGA LEQHLAEVHR GGARILIGTQ 540
  541 MLAKGHHFPD VTLVALLDVD GALFSADFRS AERFAQLYTQ VSGRAGRAGK QGEVVLQTHH 600
  601 PEHPLLQTLL YKGYDAFAEQ ALAERQTLQL PPWTSHVIIR AEDHNNQQAP VFLQQLRNVI 660
  661 QASPLSDDKL WILGPVPALA PKRGGRYRWQ ILLQHPSRIL LQHIISGTLA LINTLPEARK 720
  721 VKWVLDVDPI EG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] PSI-BLAST 22.30103 No description for 2d7eA was found.
    2 View Details [135..670] PSI-BLAST 10.30103 Helicase-like "domain" of reverse gyrase; Topoisomerase "domain" of reverse gyrase
    3 View Details [671..732] PSI-BLAST 4.0 No description for 2qsrA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • DNA clamp loader activity
    		•  4.91429252297969 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  4.80695929076807 bayes_pls_golite062009
  • binding
    		•  3.20817609308002 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  2.72462789867829 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.2817164193758 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.2502397577006 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.19474222771129 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • DNA binding
    		•  2.03222535159295 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.88455339138556 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.971476020912368 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.928091843881235 bayes_pls_golite062009
  • transcription factor activity
    		•  0.802855430913287 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.782430219754236 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.6071273686445 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.18426050934025 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147579541298736 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.14606996093053 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.13050483816765 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.113504049290503 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.111293884322157 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.089234257580272 bayes_pls_golite062009
  • 3'-5' DNA helicase activity
    		•  0.0769112340058804 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle