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Protein Overview: gi|222625804, gi...

General Information:
Name(s) found: gi|50918745 [NCBI NR]
gi|40538991 [NCBI NR]
gi|222625804 [NCBI NR]
gi|108711106 [NCBI NR]
Description(s) found:
Found 7 descriptions.
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  • gi|50918745|ref|XP_469769.1| putative transcriptional adaptor [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|40538991|gb|AAR87248.1| putative transcriptional adaptor [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|222625804|gb|EEE59936.1| hypothetical protein OsJ_12585 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|108711106|gb|ABF98901.1| transcriptional adaptor, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 570 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSRGVPNS GDDETNHRSK RRRVASSGDA PDSLSAACGG AGEGGGKKAL YHCNYCNKDI  60
   61 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL 120
  121 EGIEMYGLGN WAEVAEHVGT KTKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA 180
  181 KVQGESKKGT SVLPGDLTPK DESPFSPPRV KVEDALGEGL AGRSPSHIAG GANKKASNVG 240
  241 QFKDGANVAK VEDGHVDRSI GVKKPRYSAD EGPSLTELSG YNSKRHEFDP EYDNDAEQAL 300
  301 AEMEFKETDS ETDRELKLRV LRIYLSRLDE RKRRKEFILE RNLLFPNPLE KDLTNEDKEV 360
  361 YHRYKVFMRF LSKEEHEALV RSVLEERKIR RRIQELQECR SAGCRTLAEA KIHIEQKRKK 420
  421 EHEVNAQKAK ESGQLLSNTK VVHKTNRPMK IESDGNLDQK KGGASLDSTG RDSPKTTGHA 480
  481 GTKHWDDWDI VGFPGAELLS TSEKNLCCQN RLLPNHYLKM QEVLMQEIFK GSVAKKEDAH 540
  541 VLFKVDPAKV DNVYDMVTKK LGTNEEAPTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..284] PSI-BLAST 19.221849 c-Myb, DNA-binding domain
    2 View Details [285..478] FFAS03 1.03 crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
    3 View Details [479..570] PSI-BLAST 29.30103 Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  5.49431089902672 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.57418118498868 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.37954729923498 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.80908511328212 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35206890637362 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.30532537006075 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.08442186629685 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.41271657675151 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91962622287073 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.85172306285414 bayes_pls_golite062009
  • transcription activator activity
    		•  1.77700860354597 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23680480131205 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18932416576802 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • protein binding
    		•  0.830419844171551 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • deacetylase activity
    		•  0.530687254192222 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.292409156157916 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.25931464844298 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • histone acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  5.49431089902672 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.57418118498868 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.37954729923498 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.80908511328212 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35206890637362 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.30532537006075 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.08442186629685 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.41271657675151 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91962622287073 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.85172306285414 bayes_pls_golite062009
  • transcription activator activity
    		•  1.77700860354597 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23680480131205 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18932416576802 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • protein binding
    		•  0.830419844171551 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • deacetylase activity
    		•  0.530687254192222 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.292409156157916 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.25931464844298 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle