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Protein Overview: gi|24374608, gi|...

General Information:
Name(s) found: gi|24374608 [NCBI NR]
gi|24349225 [NCBI NR]
Description(s) found:
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  • gi|24374608|ref|NP_718651.1| multifunctional fatty acid oxidation complex subunit alpha [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349225|gb|AAN56095.1|AE015745_7 fatty oxidation complex, alpha subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • fatty oxidation complex, alpha subunit [Shewanella oneidensis MR-1]gi|24349225|gb|AAN56095.1| fatty oxidation complex, alpha subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • fatty oxidation complex, alpha subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 707 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: fatty acid catabolic process [ISSLink to PubMed article]
    Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity [ISSLink to PubMed article]
    3-hydroxybutyryl-CoA epimerase activity [ISSLink to PubMed article]
    enoyl-CoA hydratase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGKTFNLT RREDGIAILT MDVPGETMNT LKAEFGPEIS EILSEIKRDS SIRGLVLISG  60
   61 KKDSFVAGAD ISMLDACQTA GDAKALSQQG HVVFNELEAL NIPVVAAIHG ACLGGGLELA 120
  121 LACHQRVCSD DGKTMLGVPE VQLGLLPGGG GTQRLPRLVG ITTALDMMLT GKQIRPKQAL 180
  181 KMGLVNDVVP QTILLQTAVE MALAGKQIAK PVKKSLVNQL LEGTGFGRNI IFDQAAKQVA 240
  241 KKTQGNYPAP AKIIDCVRQG IAKGMQKGLE VEASHFAELV VSKESEALRS IFFATTEMKK 300
  301 ETGAEGATPR KVKKAVILGG GLMGGGIASV TTTKAKIPAR VKDINEKGLS NALSYAYKLL 360
  361 DKGVKRRHMT PAARDNLMAL MTTTTEYKGV KDADIVVEAV FEDLALKHQM VKDIERECGE 420
  421 HTIFASNTSS LPIGQIAQAA SRPENVIGLH YFSPVEKMPL VEVIAHAKTS PETIATTVAF 480
  481 ARKQGKTPIV VQDGAGFYVN RILALYMNEA AQLLLEGQSV EHLDKALVKF GFPVGPITLL 540
  541 DEVGIDVGAK ISPILEKELG ERFKAPAAFD KLLSDDRKGR KNGKGFYQYG AASKKKAVDE 600
  601 TVYGVLGIKP GVDKEMSAVA ERCVVQMLNE AVRCLDAGII ASPRDGDIGA IFGIGFPPFL 660
  661 GGPFHYIDTL GADNLVKILE RYQTQYGDRF EPCQRLKAMA AEKARFF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..707] PSI-BLAST 165.0 fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3-hydroxybutyryl-CoA epimerase activity
    		•  6.21347266913168 bayes_pls_golite062009
  • long-chain-3-hydroxyacyl-CoA dehydrogenase activity
    		•  5.99914207874933 bayes_pls_golite062009
  • racemase and epimerase activity, acting on hydroxy acids and derivatives
    		•  5.93014177440654 bayes_pls_golite062009
  • long-chain-enoyl-CoA hydratase activity
    		•  5.38361434383109 bayes_pls_golite062009
  • 3-hydroxyacyl-CoA dehydratase activity
    		•  4.29069790566708 bayes_pls_golite062009
  • 3-hydroxyacyl-CoA dehydrogenase activity
    		•  4.25084649365698 bayes_pls_golite062009
  • enoyl-CoA hydratase activity
    		•  3.92947460544831 bayes_pls_golite062009
  • CoA carboxylase activity
    		•  3.89913842968597 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  3.85567083340773 bayes_pls_golite062009
  • acetyl-CoA C-acyltransferase activity
    		•  3.6090947563188 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  3.4980371783229 bayes_pls_golite062009
  • oxidoreductase activity
    		•  3.32932637997329 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  2.94235013848105 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  2.05128385305465 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing C=C bonds
    		•  1.97586838275054 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.96484346513217 bayes_pls_golite062009
  • catalytic activity
    		•  1.83291384546132 bayes_pls_golite062009
  • dodecenoyl-CoA delta-isomerase activity
    		•  1.80820904754223 bayes_pls_golite062009
  • propionyl-CoA carboxylase activity
    		•  1.20853698666984 bayes_pls_golite062009
  • phosphogluconate dehydrogenase (decarboxylating) activity
    		•  1.10855899772836 bayes_pls_golite062009
  • ligase activity
    		•  0.98581896521131 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH group of donors
    		•  0.715028113460127 bayes_pls_golite062009
  • binding
    		•  0.663774382421921 bayes_pls_golite062009
  • protein binding
    		•  0.238856955436404 bayes_pls_golite062009
  • fatty acid synthase activity
    		•  0.0962368786590111 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle