YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374608, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	707 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374608, gi|....

Description	E-value	Query Range	Subject Range
FADJ_ECOHS - Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1	656.0	[0..1]	[707..1]
FADJ_IDILO - Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497... FADJ_IDILO - Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis GN=fadJ PE=3 SV=1	654.0	[0..1]	[707..1]
gi\|196113280, gi... - gi\|88795801\|ref\|ZP_01111492.1\| Fatty oxidation complex, alpha subunit [Alteromonas macleodii 'Deep e...	645.0	[0..6]	[707..17]
gi\|85712928, gi\|... - gi\|85712928\|ref\|ZP_01043968.1\| Fatty oxidation complex, alpha subunit [Idiomarina baltica OS145], gi...	641.0	[0..1]	[707..1]
gi\|109102275 - gi\|109102275\|ref\|XP_001086472.1\| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform ...	641.0	[0..4]	[707..37]
gi\|91223587, gi\|... - gi\|91223587\|ref\|ZP_01258852.1\| fatty oxidation complex, alpha subunit [Vibrio alginolyticus 12G01], ...	638.0	[0..1]	[707..1]
FADJ_SHEAM - Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) G...	638.0	[0..3]	[707..1]
gi\|114773633 - gi\|114773633\|ref\|ZP_01450670.1\| fatty oxidation complex, alpha subunit [alpha proteobacterium HTCC22... gi\|221135313 - gi\|221135313\|ref\|ZP_03561616.1\| multifunctional fatty acid oxidation complex subunit alpha [Glacieco... gi\|114546147, gi... - gi\|114773633\|ref\|ZP_01450670.1\| fatty oxidation complex, alpha subunit [alpha proteobacterium HTCC22...	638.0	[0..1]	[707..1]
FADJ_SHELP - Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fa...	637.0	[0..3]	[707..1]
HADHA - hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), a... gi\|123984943, gi... - gi\|123998787\|gb\|ABM87022.1\| hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoy...	636.0	[0..4]	[707..37]

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Predicted Domain #1

Region A:
Residues: [1-707]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGKTFNLT RREDGIAILT MDVPGETMNT LKAEFGPEIS EILSEIKRDS SIRGLVLISG  60
   61 KKDSFVAGAD ISMLDACQTA GDAKALSQQG HVVFNELEAL NIPVVAAIHG ACLGGGLELA 120
  121 LACHQRVCSD DGKTMLGVPE VQLGLLPGGG GTQRLPRLVG ITTALDMMLT GKQIRPKQAL 180
  181 KMGLVNDVVP QTILLQTAVE MALAGKQIAK PVKKSLVNQL LEGTGFGRNI IFDQAAKQVA 240
  241 KKTQGNYPAP AKIIDCVRQG IAKGMQKGLE VEASHFAELV VSKESEALRS IFFATTEMKK 300
  301 ETGAEGATPR KVKKAVILGG GLMGGGIASV TTTKAKIPAR VKDINEKGLS NALSYAYKLL 360
  361 DKGVKRRHMT PAARDNLMAL MTTTTEYKGV KDADIVVEAV FEDLALKHQM VKDIERECGE 420
  421 HTIFASNTSS LPIGQIAQAA SRPENVIGLH YFSPVEKMPL VEVIAHAKTS PETIATTVAF 480
  481 ARKQGKTPIV VQDGAGFYVN RILALYMNEA AQLLLEGQSV EHLDKALVKF GFPVGPITLL 540
  541 DEVGIDVGAK ISPILEKELG ERFKAPAAFD KLLSDDRKGR KNGKGFYQYG AASKKKAVDE 600
  601 TVYGVLGIKP GVDKEMSAVA ERCVVQMLNE AVRCLDAGII ASPRDGDIGA IFGIGFPPFL 660
  661 GGPFHYIDTL GADNLVKILE RYQTQYGDRF EPCQRLKAMA AEKARFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	165.0
Match:	1wdkA
Description:	fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-hydroxybutyryl-CoA epimerase activity	6.21347266913168	bayes_pls_golite062009
long-chain-3-hydroxyacyl-CoA dehydrogenase activity	5.99914207874933	bayes_pls_golite062009
racemase and epimerase activity, acting on hydroxy acids and derivatives	5.93014177440654	bayes_pls_golite062009
long-chain-enoyl-CoA hydratase activity	5.38361434383109	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydratase activity	4.29069790566708	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	4.25084649365698	bayes_pls_golite062009
enoyl-CoA hydratase activity	3.92947460544831	bayes_pls_golite062009
CoA carboxylase activity	3.89913842968597	bayes_pls_golite062009
acetyl-CoA carboxylase activity	3.85567083340773	bayes_pls_golite062009
acetyl-CoA C-acyltransferase activity	3.6090947563188	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	3.4980371783229	bayes_pls_golite062009
oxidoreductase activity	3.32932637997329	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.94235013848105	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	2.05128385305465	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	1.97586838275054	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.96484346513217	bayes_pls_golite062009
catalytic activity	1.83291384546132	bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity	1.80820904754223	bayes_pls_golite062009
propionyl-CoA carboxylase activity	1.20853698666984	bayes_pls_golite062009
phosphogluconate dehydrogenase (decarboxylating) activity	1.10855899772836	bayes_pls_golite062009
ligase activity	0.98581896521131	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors	0.715028113460127	bayes_pls_golite062009
binding	0.663774382421921	bayes_pls_golite062009
protein binding	0.238856955436404	bayes_pls_golite062009
fatty acid synthase activity	0.0962368786590111	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: