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Protein Overview: gi|24348709, gi|...

General Information:
Name(s) found: gi|24374196 [NCBI NR]
gi|24348709 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374196|ref|NP_718239.1| prophage MuSo2, DNA transposition protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348709|gb|AAN55683.1|AE015706_11 prophage MuSo2, DNA transposition protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 318 amino acids

    Gene Ontology:
    Cellular Component: provirus [TASLink to PubMed article]
    Biological Process: transposition, DNA-mediated [ISSLink to PubMed article]
    Molecular Function: transposase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVHSLTAK DSKAEIRKTD VVMQINTLIE AGRVVAAHLA QEISVAPSTL SQVLNGQYKA  60
   61 NTTQVVKKLD NWLRMREQRE ANPNLDPGFV LTPTANLVMD NLSYAQITQA IVVIIGASGV 120
  121 GKSRALEEYQ RSNNNVWKVI ASPSRSSLTE LLYEIAMELG MAQAPRTKGP LARVIRQRLK 180
  181 GSEGLIIVDE ADHLDYPTLE ELRILQEETG IGMALVGNNK VYTQLTGGRR NEDYARLFSR 240
  241 IAKKLSINKT KQADVRAIAK AWNLQHDAEI SLMIQISEKP GGLRLLSKTL KLAAMFAKGA 300
  301 AITEALLRTA FNELETNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] PSI-BLAST 50.522879 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-dependent ATPase activity
    		•  2.72462789867829 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.2817164193758 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.09958264166792 bayes_pls_golite062009
  • signal transducer activity
    		•  2.09958264166792 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.88455339138556 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.84050240798436 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.81138802583782 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.78927528875848 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.78903889318615 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.75668683716541 bayes_pls_golite062009
  • binding
    		•  1.62320027057768 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.40857406038173 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  1.29640539057136 bayes_pls_golite062009
  • hydrolase activity
    		•  1.29419296935491 bayes_pls_golite062009
  • ATPase activity
    		•  1.18431260772292 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  1.12431517057397 bayes_pls_golite062009
  • helicase activity
    		•  1.0321619822241 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.663470564404406 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.649974249669167 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.5607032154839 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.5607032154839 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.424353459677833 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • DNA binding
    		•  0.0122594154914252 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle