| Protein: | gi|24348709, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 318 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348709, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
227.0 | [0..7] | [313..46] |
|
|
221.0 | [0..4] | [313..56] |
|
|
218.0 | [0..9] | [307..54] |
|
|
217.0 | [0..3] | [308..35] |
|
|
217.0 | [0..3] | [315..37] |
|
|
216.0 | [0..10] | [311..51] |
|
|
216.0 | [0..14] | [317..27] |
|
|
214.0 | [0..16] | [317..56] |
|
|
214.0 | [0..1] | [311..35] |
|
|
213.0 | [0..2] | [311..33] |
|
Region A: Residues: [1-318] |
1 11 21 31 41 51
| | | | | |
1 MSNVHSLTAK DSKAEIRKTD VVMQINTLIE AGRVVAAHLA QEISVAPSTL SQVLNGQYKA 60
61 NTTQVVKKLD NWLRMREQRE ANPNLDPGFV LTPTANLVMD NLSYAQITQA IVVIIGASGV 120
121 GKSRALEEYQ RSNNNVWKVI ASPSRSSLTE LLYEIAMELG MAQAPRTKGP LARVIRQRLK 180
181 GSEGLIIVDE ADHLDYPTLE ELRILQEETG IGMALVGNNK VYTQLTGGRR NEDYARLFSR 240
241 IAKKLSINKT KQADVRAIAK AWNLQHDAEI SLMIQISEKP GGLRLLSKTL KLAAMFAKGA 300
301 AITEALLRTA FNELETNE
|
| Detection Method: |  |
| Confidence: | 50.522879 |
| Match: | 1ny5A |
| Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| molecular transducer activity | 2.09958264166792 | bayes_pls_golite062009 |
| signal transducer activity | 2.09958264166792 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 1.84050240798436 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.81138802583782 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.78927528875848 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.78903889318615 | bayes_pls_golite062009 |
| two-component response regulator activity | 1.75668683716541 | bayes_pls_golite062009 |
| binding | 1.62320027057768 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.40857406038173 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.29640539057136 | bayes_pls_golite062009 |
| hydrolase activity | 1.29419296935491 | bayes_pls_golite062009 |
| ATPase activity | 1.18431260772292 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.12431517057397 | bayes_pls_golite062009 |
| helicase activity | 1.0321619822241 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.663470564404406 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.649974249669167 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.5607032154839 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.5607032154839 | bayes_pls_golite062009 |
| nucleic acid binding | 0.424353459677833 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| DNA binding | 0.0122594154914252 | bayes_pls_golite062009 |
