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Protein Overview: gi|24348376, gi|...

General Information:
Name(s) found: gi|24373941 [NCBI NR]
gi|24348376 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24373941|ref|NP_717984.1| penicillin-binding protein 4 [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348376|gb|AAN55428.1|AE015680_3 penicillin-binding protein 4 [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 507 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: serine-type D-Ala-D-Ala carboxypeptidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFSRLFTL PRSTGLLLTV VATALFPSNV WAAAADIKHT TLDQQMSDIA PSHSQIALLA  60
   61 HDMSNDKQLY SQQADTLFIP ASTQKVLTAV TALAALGPEF SYVTDLWSDA PIRQGHVEGS 120
  121 VYLRFSGDPT LTHEDLKALF AQLQKLGIKR IEGHLYLVGD KQEQLQAPGW VWDDLGICFA 180
  181 APVSSYIINQ NCVYGQFVPS SAKQTSRVTL SANSYGVNVS SDAIFSPQAN HDFCQLDLVR 240
  241 LSQNQYHLRG CYPGSEAIPL AIAISDPQKF AIDTLTATLK GKISLSGKVK IGHDIPDKAK 300
  301 LIASHRSAPL PELLKTMLLK SDNLIADSLF KRVGQDYYKT QGSFTYGAAA MRHILTELGI 360
  361 DLTNANIVDG SGLSRYNLLS AKQLADVLTL MYQDARFHSL IDSLPEAGVS GTLKYRQGYT 420
  421 QPPLKNRVFA KTGSMQGVAN LAGFIRIPQQ RDILFVVLEN GISPETKKQR KPAFSADFLT 480
  481 RLMATVEQQA HTSQTSVKEL NTVKKIN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..507] PSI-BLAST 104.0 No description for 2ex2A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  3.49880252911035 bayes_pls_golite062009
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.12650314537616 bayes_pls_golite062009
  • penicillin binding
    		•  2.89507018520983 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  2.70174066798582 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.69091897402517 bayes_pls_golite062009
  • drug binding
    		•  2.27792716125407 bayes_pls_golite062009
  • peptidase activity
    		•  2.02492099567377 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.96547160092829 bayes_pls_golite062009
  • catalytic activity
    		•  1.85492008367309 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  1.82206884632324 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  1.13698125224034 bayes_pls_golite062009
  • binding
    		•  1.11566650386305 bayes_pls_golite062009
  • serine hydrolase activity
    		•  0.402878339821269 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  0.392678049813626 bayes_pls_golite062009
  • exopeptidase activity
    		•  0.150639262435765 bayes_pls_golite062009
  • protein binding
    		•  0.0666688846338231 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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