YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348376, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	507 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348376, gi|....

Description	E-value	Query Range	Subject Range
gi\|46133506 - gi\|46133506\|ref\|ZP_00157307.2\| COG2027: D-alanyl-D-alanine carboxypeptidase (penicillin-binding prot... gi\|157389824, gi... - gi\|157389828\|emb\|CAM32734.1\| penicillin-binding protein 4 [Haemophilus influenzae], gi\|157389824\|emb... gi\|145271882, gi... - gi\|145638910\|ref\|ZP_01794518.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Haemophilus influ...	407.0	[0..18]	[488..4]
gi\|157389822, gi... - gi\|157389822\|emb\|CAM32731.1\| penicillin-binding protein 4 [Haemophilus influenzae], gi\|157389820\|emb... gi\|145270705, gi... - gi\|145636183\|ref\|ZP_01791853.1\| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase... gi\|53732766 - gi\|53732766\|ref\|ZP_00155040.2\| COG2027: D-alanyl-D-alanine carboxypeptidase (penicillin-binding prot...	407.0	[0..18]	[488..4]
PBP4_HAEIN, DACB... - Penicillin-binding protein 4 precursor - Haemophilus influenzae, D-alanyl-D-alanine carboxypeptidase... DACB_HAEIN - D-alanyl-D-alanine carboxypeptidase DacB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / ...	406.0	[0..18]	[488..4]
gi\|157389818 - gi\|157389818\|emb\|CAM32729.1\| penicillin-binding protein 4 [Haemophilus influenzae] gi\|229809631, gi... - gi\|229847490\|ref\|ZP_04467587.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Haemophilus influ... gi\|148826012, gi... - gi\|148826012\|ref\|YP_001290765.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Haemophilus infl... gi\|68250000, gi\|... - gi\|68250000\|ref\|YP_249112.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Haemophilus influenz...	404.0	[0..18]	[488..4]
gi\|36787796, gi\|... - gi\|37528358\|ref\|NP_931703.1\| penicillin-binding protein 4 precursor (PBP-4) [Includes: D-alanyl-D-al...	390.0	[0..1]	[488..20]
gi\|227970 - gi\|227970\|prf\|\|1714241A penicillin-binding protein 4	384.0	[0..8]	[488..1]
gi\|14275912 - gi\|14275912\|dbj\|BAB58902.1\| penicillin-binding protein 4 [Haemophilus influenzae]	383.0	[0..46]	[461..7]
gi\|75187988, gi\|... - gi\|75187988\|ref\|ZP_00701255.1\| COG2027: D-alanyl-D-alanine carboxypeptidase (penicillin-binding prot...	383.0	[0..8]	[488..1]
EG10202 - D-alanyl-D-alanine carboxypeptidase / D-alanine D-alanine carboxypeptidase PBP4; penicillin-binding ... PBP4_ECOLI - Penicillin-binding protein 4 precursor (PBP-4) [Includes: D-alanyl-D-alanine carboxypeptidase (EC 3.... gi\|238902284, gi... - gi\|238902284\|ref\|YP_002928080.1\| D-alanyl-D-alanine carboxypeptidase [Escherichia coli BW2952], gi\|2... gi\|254038347, gi... - gi\|254038347\|ref\|ZP_04872405.1\| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase... gi\|89109945, gi\|... - gi\|89109945\|ref\|AP_003725.1\| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr.... gi\|188494584, gi... - gi\|75510979\|ref\|ZP_00733738.1\| COG2027: D-alanyl-D-alanine carboxypeptidase (penicillin-binding prot... gi\|170082717, gi... - gi\|170082717\|ref\|YP_001732037.1\| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 sub... gi\|218371937, gi... - gi\|218701951\|ref\|YP_002409580.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Escherichia coli... EG10202 - D-alanyl-D-alanine carboxypeptidase / D-alanine D-alanine carboxypeptidase PBP4; penicillin-binding ... gi\|170519171, gi... - gi\|170681453\|ref\|YP_001745454.1\| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidas...	383.0	[0..8]	[488..1]
gi\|75254890 - gi\|75254890\|ref\|ZP_00726860.1\| COG2027: D-alanyl-D-alanine carboxypeptidase (penicillin-binding prot... gi\|187427587, gi... - gi\|187730595\|ref\|YP_001881903.1\| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidas... gi\|218696887, gi... - gi\|218696887\|ref\|YP_002404554.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Escherichia coli... gi\|209913916, gi... - gi\|209920657\|ref\|YP_002294741.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Escherichia coli... gi\|218362520, gi... - gi\|218555752\|ref\|YP_002388665.1\| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Escherichia coli...	382.0	[0..8]	[488..1]

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Predicted Domain #1

Region A:
Residues: [1-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFSRLFTL PRSTGLLLTV VATALFPSNV WAAAADIKHT TLDQQMSDIA PSHSQIALLA  60
   61 HDMSNDKQLY SQQADTLFIP ASTQKVLTAV TALAALGPEF SYVTDLWSDA PIRQGHVEGS 120
  121 VYLRFSGDPT LTHEDLKALF AQLQKLGIKR IEGHLYLVGD KQEQLQAPGW VWDDLGICFA 180
  181 APVSSYIINQ NCVYGQFVPS SAKQTSRVTL SANSYGVNVS SDAIFSPQAN HDFCQLDLVR 240
  241 LSQNQYHLRG CYPGSEAIPL AIAISDPQKF AIDTLTATLK GKISLSGKVK IGHDIPDKAK 300
  301 LIASHRSAPL PELLKTMLLK SDNLIADSLF KRVGQDYYKT QGSFTYGAAA MRHILTELGI 360
  361 DLTNANIVDG SGLSRYNLLS AKQLADVLTL MYQDARFHSL IDSLPEAGVS GTLKYRQGYT 420
  421 QPPLKNRVFA KTGSMQGVAN LAGFIRIPQQ RDILFVVLEN GISPETKKQR KPAFSADFLT 480
  481 RLMATVEQQA HTSQTSVKEL NTVKKIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2ex2A
Description:	No description for 2ex2A was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.49880252911035	bayes_pls_golite062009
serine-type D-Ala-D-Ala carboxypeptidase activity	3.12650314537616	bayes_pls_golite062009
penicillin binding	2.89507018520983	bayes_pls_golite062009
serine-type carboxypeptidase activity	2.70174066798582	bayes_pls_golite062009
serine-type exopeptidase activity	2.69091897402517	bayes_pls_golite062009
drug binding	2.27792716125407	bayes_pls_golite062009
peptidase activity	2.02492099567377	bayes_pls_golite062009
carboxypeptidase activity	1.96547160092829	bayes_pls_golite062009
catalytic activity	1.85492008367309	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.82206884632324	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.13698125224034	bayes_pls_golite062009
binding	1.11566650386305	bayes_pls_golite062009
serine hydrolase activity	0.402878339821269	bayes_pls_golite062009
serine-type peptidase activity	0.392678049813626	bayes_pls_golite062009
exopeptidase activity	0.150639262435765	bayes_pls_golite062009
protein binding	0.0666688846338231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: