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Protein Overview: gi|24347847, gi|...

General Information:
Name(s) found: gi|24373535 [NCBI NR]
gi|24347847 [NCBI NR]
Description(s) found:
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  • gi|24373535|ref|NP_717578.1| acyl-CoA synthetase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347847|gb|AAN55022.1|AE015640_5 AMP-binding family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • AMP-binding family protein [Shewanella oneidensis MR-1]gi|24347847|gb|AAN55022.1| AMP-binding family protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • AMP-binding family protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
  • acyl-CoA synthase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 578 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biological_process [ND]
    Molecular Function: AMP binding [ISSLink to PubMed article]
    catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSTNQVTN QATNQTISPL KYSEFRGPNA PELVEKTIGQ YLDDIANTYP EQLAVVVNHQ  60
   61 DIRWNYRQYL ARIDALAAGL LKLGIGPGDR IGIWSPNNIE WCLTQFATAK IGAIMVCINP 120
  121 AYRPEELQYA LTNVGCRAVI CADKFKSSNY LQMLYTLAPE LKECAAGQLQ AKALPELQFV 180
  181 IRMGAEKSPG MLNFDDLLVE VSADDKAMLE RIANGLSPYD AINIQFTSGT TGSPKGATLS 240
  241 HHNILNNGYL VAEAMKFTCD DKLCIPVPLY HCFGMVLGNL VCLAKGAAAV FPGDSFDPLT 300
  301 TLEVVERERC TALHGVPTMF IAELEHPEFT RFDLSSLRTG VMAGATCPEE VMRRVQQLMY 360
  361 MQEVLIGYGQ TECSPLNHIT EIDSPVEKRV LTVGRALPHT EVKIVDEFGE VLPINQPGEV 420
  421 CSRGYCIMQC YWNDPEKTAA TIDREGWLHS GDIGQMDEQG YVQIVGRIKD MIIRGGENIY 480
  481 PREIEEKLYT HKDVQDAAVF GVHSDKYGEE VCAWIKVRSG ATIKEEDIRH FLTEKFAYFK 540
  541 VPRYIKFVDQ YPMTVTGKIQ KFKMRELMYQ ELYEDINA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..578] PSI-BLAST 106.0 Crystal structure of tt0168 from Thermus thermophilus HB8

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-sulfur bonds
    		•  5.10123876514454 bayes_pls_golite062009
  • fatty acid ligase activity
    		•  4.83067429373059 bayes_pls_golite062009
  • long-chain fatty acid transporter activity
    		•  4.82574147628486 bayes_pls_golite062009
  • fatty acid transporter activity
    		•  4.78347692728947 bayes_pls_golite062009
  • long-chain fatty acid-CoA ligase activity
    		•  4.72692389032116 bayes_pls_golite062009
  • acetate-CoA ligase activity
    		•  4.48129067128523 bayes_pls_golite062009
  • acid-thiol ligase activity
    		•  4.28278725989432 bayes_pls_golite062009
  • CoA-ligase activity
    		•  4.12850865352867 bayes_pls_golite062009
  • lipid transporter activity
    		•  2.59608399999188 bayes_pls_golite062009
  • ligase activity
    		•  2.49556073715112 bayes_pls_golite062009
  • luciferin monooxygenase activity
    		•  2.37933768142137 bayes_pls_golite062009
  • catalytic activity
    		•  1.83545185797733 bayes_pls_golite062009
  • transporter activity
    		•  1.29780964436121 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.07143339827205 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.03753946113449 bayes_pls_golite062009
  • binding
    		•  0.903437109563498 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.54797726647835 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.464663038956639 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.251681382273558 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.225448500718996 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.216579620878492 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.177812048124158 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.174283007890308 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.173963339749644 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0401881910649647 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0047964784091391 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle