YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347847, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	578 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347847, gi|....

Description	E-value	Query Range	Subject Range
gi\|78505851, gi\|... - gi\|78686382\|ref\|ZP_00851150.1\| AMP-binding family protein [Shewanella sp. ANA-3], gi\|78505851\|gb\|EAP...	516.0	[0..1]	[578..1]
gi\|82405261, gi\|... - gi\|82496686\|ref\|ZP_00882251.1\| AMP-binding family protein [Shewanella sp. MR-4], gi\|82405261\|gb\|EAP4...	514.0	[0..1]	[578..1]
gi\|78508833, gi\|... - gi\|78691750\|ref\|ZP_00856347.1\| AMP-binding family protein [Shewanella sp. MR-7], gi\|78508833\|gb\|EAP2...	512.0	[0..1]	[578..1]
gi\|56420133, gi\|... - gi\|56420133\|ref\|YP_147451.1\| acyl-CoA synthetase [Geobacillus kaustophilus HTA426], gi\|56379975\|dbj\|...	504.0	[0..37]	[572..5]
gi\|68519006, gi\|... - gi\|68543294\|ref\|ZP_00583004.1\| AMP-dependent synthetase and ligase [Shewanella baltica OS155], gi\|68...	502.0	[0..1]	[578..1]
gi\|153001163, gi... - gi\|153001163\|ref\|YP_001366844.1\| acyl-CoA synthetase [Shewanella baltica OS185], gi\|151365781\|gb\|ABS... gi\|113908066, gi... - gi\|160875833\|ref\|YP_001555149.1\| acyl-CoA synthetase [Shewanella baltica OS195], gi\|160861355\|gb\|ABX... gi\|217972916, gi... - gi\|217972916\|ref\|YP_002357667.1\| AMP-binding domain protein [Shewanella baltica OS223], gi\|217498051...	501.0	[0..1]	[578..1]
gi\|78367758, gi\|... - gi\|78367758\|ref\|ZP_00838021.1\| AMP-dependent synthetase and ligase [Shewanella sp. PV-4], gi\|7836020...	501.0	[0..1]	[577..1]
gi\|110622606, gi... - gi\|147919060\|ref\|YP_687210.1\| putative long chain fatty-acid CoA ligase [uncultured methanogenic arc...	498.0	[0..16]	[566..1]
gi\|48781408, gi\|... - gi\|91785731\|ref\|YP_560937.1\| acyl-CoA synthetase [Burkholderia xenovorans LB400], gi\|91689685\|gb\|ABE...	496.0	[0..22]	[572..18]
gi\|89092350, gi\|... - gi\|89092350\|ref\|ZP_01165304.1\| acyl-CoA synthase [Oceanospirillum sp. MED92], gi\|89083438\|gb\|EAR6265...	496.0	[0..27]	[572..10]

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Predicted Domain #1

Region A:
Residues: [1-578]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSTNQVTN QATNQTISPL KYSEFRGPNA PELVEKTIGQ YLDDIANTYP EQLAVVVNHQ  60
   61 DIRWNYRQYL ARIDALAAGL LKLGIGPGDR IGIWSPNNIE WCLTQFATAK IGAIMVCINP 120
  121 AYRPEELQYA LTNVGCRAVI CADKFKSSNY LQMLYTLAPE LKECAAGQLQ AKALPELQFV 180
  181 IRMGAEKSPG MLNFDDLLVE VSADDKAMLE RIANGLSPYD AINIQFTSGT TGSPKGATLS 240
  241 HHNILNNGYL VAEAMKFTCD DKLCIPVPLY HCFGMVLGNL VCLAKGAAAV FPGDSFDPLT 300
  301 TLEVVERERC TALHGVPTMF IAELEHPEFT RFDLSSLRTG VMAGATCPEE VMRRVQQLMY 360
  361 MQEVLIGYGQ TECSPLNHIT EIDSPVEKRV LTVGRALPHT EVKIVDEFGE VLPINQPGEV 420
  421 CSRGYCIMQC YWNDPEKTAA TIDREGWLHS GDIGQMDEQG YVQIVGRIKD MIIRGGENIY 480
  481 PREIEEKLYT HKDVQDAAVF GVHSDKYGEE VCAWIKVRSG ATIKEEDIRH FLTEKFAYFK 540
  541 VPRYIKFVDQ YPMTVTGKIQ KFKMRELMYQ ELYEDINA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1ultA
Description:	Crystal structure of tt0168 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-sulfur bonds	5.10123876514454	bayes_pls_golite062009
fatty acid ligase activity	4.83067429373059	bayes_pls_golite062009
long-chain fatty acid transporter activity	4.82574147628486	bayes_pls_golite062009
fatty acid transporter activity	4.78347692728947	bayes_pls_golite062009
long-chain fatty acid-CoA ligase activity	4.72692389032116	bayes_pls_golite062009
acetate-CoA ligase activity	4.48129067128523	bayes_pls_golite062009
acid-thiol ligase activity	4.28278725989432	bayes_pls_golite062009
CoA-ligase activity	4.12850865352867	bayes_pls_golite062009
lipid transporter activity	2.59608399999188	bayes_pls_golite062009
ligase activity	2.49556073715112	bayes_pls_golite062009
luciferin monooxygenase activity	2.37933768142137	bayes_pls_golite062009
catalytic activity	1.83545185797733	bayes_pls_golite062009
transporter activity	1.29780964436121	bayes_pls_golite062009
transmembrane transporter activity	1.07143339827205	bayes_pls_golite062009
substrate-specific transporter activity	1.03753946113449	bayes_pls_golite062009
binding	0.903437109563498	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.54797726647835	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.464663038956639	bayes_pls_golite062009
active transmembrane transporter activity	0.251681382273558	bayes_pls_golite062009
primary active transmembrane transporter activity	0.225448500718996	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.216579620878492	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.177812048124158	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.174283007890308	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.173963339749644	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0401881910649647	bayes_pls_golite062009
pyrophosphatase activity	0.0047964784091391	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: