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Protein Overview: gi|24347815, gi|...

General Information:
Name(s) found: gi|24373512 [NCBI NR]
gi|24347815 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373512|ref|NP_717555.1| sodium:dicarboxylate symporter family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347815|gb|AAN54999.1|AE015637_15 sodium:dicarboxylate symporter family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 437 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: dicarboxylic acid transport [ISSLink to PubMed article]
    Molecular Function: sodium:dicarboxylate symporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSLQNKLG LTSKILIGMA TGIIFGLILR NLFPDSIFIK DYITDGFLHV IGTIFISSLK  60
   61 MLVVPLVFIS LVCGTCSLSE PSKLGRLGGK TLAFYLFTTV LALVLAVFAA VIVHPGDATL 120
  121 ANEKLNYVAK EAPSFAQVII DMMPTNPVQA MSEGNMLQII IFAVIFGFAI AHLGERGNRI 180
  181 AQLFDDLNNV IMRVVTLVMQ LAPYGVFALM AKLALTLGLE TFGSVVKYFF LVLTLLLIHN 240
  241 FVTYSILLKA FSGLNPLIFI RKMRDVQLFA FSTASSNATL PITIEASEHR LGVDNKIASF 300
  301 TLPLGATINM DGTAIMQGVA TVFIAQVFGI ELSLTDYAAV IVTATLASIG TAGVPGVGLI 360
  361 MLAMVLNQVG LPVEGIALII GVDRLLDMVR TAVNVTGDCV ATVIIAKSEG EFNETVFNNT 420
  421 QAGKIAPSFD EQVHKID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..437] PSI-BLAST 86.0 Structure of glutamate transporter homolog from Pyrococcus horikoshii

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • dicarboxylic acid transmembrane transporter activity
    		•  6.43530691895523 bayes_pls_golite062009
  • carboxylic acid transmembrane transporter activity
    		•  6.20769381184606 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  6.19258658226115 bayes_pls_golite062009
  • anion:cation symporter activity
    		•  5.39486898992441 bayes_pls_golite062009
  • transporter activity
    		•  5.14616859489508 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  5.08516306839475 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  5.06400974103865 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  5.03536308870823 bayes_pls_golite062009
  • L-aspartate transmembrane transporter activity
    		•  4.75851143790089 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.56245375639148 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  4.38524103588396 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  4.37939766329509 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  3.93820513423101 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  3.7335977004076 bayes_pls_golite062009
  • L-amino acid transmembrane transporter activity
    		•  3.55306444119183 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  3.47181854698038 bayes_pls_golite062009
  • symporter activity
    		•  3.47181854698038 bayes_pls_golite062009
  • organic acid:sodium symporter activity
    		•  3.44677545809568 bayes_pls_golite062009
  • amino acid transmembrane transporter activity
    		•  3.22640982674356 bayes_pls_golite062009
  • L-glutamate transmembrane transporter activity
    		•  3.01617678444307 bayes_pls_golite062009
  • acidic amino acid transmembrane transporter activity
    		•  3.01617678444307 bayes_pls_golite062009
  • high-affinity glutamate transmembrane transporter activity
    		•  2.687419691871 bayes_pls_golite062009
  • C4-dicarboxylate transmembrane transporter activity
    		•  2.522484225611 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  2.02127810434029 bayes_pls_golite062009
  • solute:sodium symporter activity
    		•  1.76557983021416 bayes_pls_golite062009
  • amine binding
    		•  1.22219692417544 bayes_pls_golite062009
  • solute:hydrogen symporter activity
    		•  0.96942313177856 bayes_pls_golite062009
  • binding
    		•  0.92648751720567 bayes_pls_golite062009
  • sulfur amino acid transmembrane transporter activity
    		•  0.791452273778402 bayes_pls_golite062009
  • L-cystine transmembrane transporter activity
    		•  0.577818180430181 bayes_pls_golite062009
  • glutamate:sodium symporter activity
    		•  0.553718735358201 bayes_pls_golite062009
  • neutral amino acid transmembrane transporter activity
    		•  0.444280550441749 bayes_pls_golite062009
  • monocarboxylic acid transmembrane transporter activity
    		•  0.31624582149961 bayes_pls_golite062009
  • protein binding
    		•  0.241603585422086 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.119412711778045 bayes_pls_golite062009
  • channel activity
    		•  0.119412711778045 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0999184515491418 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle