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Protein Overview: gi|24372629, gi|...

General Information:
Name(s) found: gi|24372629 [NCBI NR]
gi|24346665 [NCBI NR]
Description(s) found:
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  • gi|24372629|ref|NP_716671.1| amino acid ABC transporter, permease protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346665|gb|AAN54116.1|AE015549_2 amino acid ABC transporter, permease protein [Shewanella oneidensis MR-1] [NCBI NR]
  • amino acid ABC transporter, permease protein [Shewanella oneidensis MR-1]gi|24346665|gb|AAN54116.1| amino acid ABC transporter, permease protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • amino acid ABC transporter, permease protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: amino acid transport [ISSLink to PubMed article]
    Molecular Function: amino acid-transporting ATPase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEAINTSLF SPIGDDGMIG ILLILNGLKV TLIVTFFAML LGAVLGVGTT LMKMSSKWYI  60
   61 RFPAELYVGV IRGTPVVVQL VILYFIVLAA LDVDKITAAI IAFGLNSGAY ISEIIRAGIQ 120
  121 AVDKGQTEAA RSLGLSQAMT MKLIILPQAI KNILPALGNE FIVLLKETAV IGFIGGVDLM 180
  181 RAGEIIRSRT FEDSVPLFTC ALIYLFLTYS FTFMLSKFEK RLKQSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 19.522879 No description for 2onkC was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  2.92901170384371 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.82231503501622 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  2.62912035749387 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  2.58567076459772 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  2.58112472232827 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  2.57722913421807 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  2.57722913421807 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  2.57687258170314 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.26533438516544 bayes_pls_golite062009
  • ATPase activity
    		•  2.12523930663356 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.08705004234574 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.06571106810861 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.02843508794757 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.01869168199434 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.01800287925825 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.98824613202602 bayes_pls_golite062009
  • hydrolase activity
    		•  1.27489880499396 bayes_pls_golite062009
  • amino acid transmembrane transporter activity
    		•  1.12102819427113 bayes_pls_golite062009
  • carboxylic acid transmembrane transporter activity
    		•  0.918466003981509 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  0.890308406193876 bayes_pls_golite062009
  • catalytic activity
    		•  0.79821499476005 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.67039520089395 bayes_pls_golite062009
  • carbohydrate transmembrane transporter activity
    		•  0.56369901852468 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  0.525383483850367 bayes_pls_golite062009
  • sugar transmembrane transporter activity
    		•  0.44915416750675 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle