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Protein Overview: VMS1_YEAST

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..187] MSA 11.021989 View MSA. No confident structure predictions are available.
2 View Details [188..305] deduced N/A No confident structure predictions are available.
3 View Details [306..462] PSI-BLAST 20.522879 I-kappa-B-alpha
4 View Details [463..542] PSI-BLAST 20.522879 I-kappa-B-alpha
5 View Details [543..632] deduced N/A Confident ab initio structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • nucleic acid binding
  • 2.85972242708612 bayes_pls_golite062009
  • transcription regulator activity
  • 2.77701617604772 bayes_pls_golite062009
  • DNA binding
  • 2.71411659179983 bayes_pls_golite062009
  • binding
  • 1.97525193898847 bayes_pls_golite062009
  • transcription factor activity
  • 1.90143001800384 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 1.06438483834477 bayes_pls_golite062009
  • transcription activator activity
  • 0.888241744617002 bayes_pls_golite062009
  • protein binding
  • 0.721263040163177 bayes_pls_golite062009
  • transcription repressor activity
  • 0.375362589875489 bayes_pls_golite062009
  • catalytic activity
  • 0.263007611601737 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.226250920465406 bayes_pls_golite062009
  • transcription factor binding
  • 0.191965432731838 bayes_pls_golite062009
  • chromatin binding
  • 0.131327938577204 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
  • 1.58699086730647 bayes_pls_golite062009
  • protein binding
  • 1.41750957807465 bayes_pls_golite062009
  • transcription regulator activity
  • 0.668531056539717 bayes_pls_golite062009
  • nucleic acid binding
  • 0.403559033288365 bayes_pls_golite062009
  • DNA binding
  • 0.186657583240225 bayes_pls_golite062009
  • ligase activity
  • 0.0845684108313678 bayes_pls_golite062009
  • transcription factor binding
  • 0.0182460237384001 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle