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Protein Overview: VMS1_YEAST

General Information:
Name(s) found: VMS1_YEAST [Swiss-Prot]
Description(s) found:
  • Protein VMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMS1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 632 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSQKASKMT GSLKKNDLYI FDLSEQLLNS LKLMSFDSTL REVEVEKTSD NDRNKESGDL  60
   61 QIARKKVTSN VMRCSVCQMS FDSRNEQKAH YQTDYHLMNV KRNLRGLDIL SVEEFDALIS 120
  121 KEHGIKSEDE NSGGEQTSSD HEESEEASDR DPDLQTNNYM ETIIENDLQK LGFQKDESDA 180
  181 ISHINTQSPY IYFKSKYLQK NEVLAIYKSL FNKRSLSNPN EALTFWNSQE NPMAISALFM 240
  241 VGGGHFAGAI VSHQRLNVKG NAHKKDETLI EQAVNFLEHK TFHRYTTRRK QGGSQSAMDN 300
  301 AKGKANSAGS ALRRYNESAL KTDIQGVLKD WEPYLSKCDN IFIRARNVSD KKIFTDNTVL 360
  361 NKGDERIKSF PFTTNRPTVL ELKKAWCELS YLKILPKPEP LAVKETVQKL EVSNKKDEFK 420
  421 EKQEPLLEEI QTEEIISLLK KGRAPLLISF LKKNKLDGNF RLKPESKYSL TPTMLHYASQ 480
  481 QGMKQMALIL LSNIKCDPTI KNRLGRTAWD LNRNDDVRHA FQIARYNLGE SFTNWDETHI 540
  541 GQPLSREQVD EINEKKKAIE NEKAEKLIKL ELEAAKEKQR FAKDAERGPG KKLTNIPSIQ 600
  601 QQNLNSLTDE QRRRLMREQR ARAAEERMKK KY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..187] MSA 11.021989 View MSA. No confident structure predictions are available.
    2 View Details [188..305] deduced N/A No confident structure predictions are available.
    3 View Details [306..462] PSI-BLAST 20.522879 I-kappa-B-alpha
    4 View Details [463..542] PSI-BLAST 20.522879 I-kappa-B-alpha
    5 View Details [543..632] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.85972242708612 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.77701617604772 bayes_pls_golite062009
  • DNA binding
    		•  2.71411659179983 bayes_pls_golite062009
  • binding
    		•  1.97525193898847 bayes_pls_golite062009
  • transcription factor activity
    		•  1.90143001800384 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.06438483834477 bayes_pls_golite062009
  • transcription activator activity
    		•  0.888241744617002 bayes_pls_golite062009
  • protein binding
    		•  0.721263040163177 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.375362589875489 bayes_pls_golite062009
  • catalytic activity
    		•  0.263007611601737 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.226250920465406 bayes_pls_golite062009
  • transcription factor binding
    		•  0.191965432731838 bayes_pls_golite062009
  • chromatin binding
    		•  0.131327938577204 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.58699086730647 bayes_pls_golite062009
  • protein binding
    		•  1.41750957807465 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.668531056539717 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.403559033288365 bayes_pls_golite062009
  • DNA binding
    		•  0.186657583240225 bayes_pls_golite062009
  • ligase activity
    		•  0.0845684108313678 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0182460237384001 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle