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Protein Overview: SCC1_YEAST

General Information:
Name(s) found: SCC1_YEAST [Swiss-Prot]
Description(s) found:
  • Sister chromatid cohesion protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCD1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 566 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTENPQRLT VLRLATNKGP LAQIWLASNM SNIPRGSVIQ THIAESAKEI AKASGCDDES  60
   61 GDNEYITLRT SGELLQGIVR VYSKQATFLL TDIKDTLTKI SMLFKTSQKM TSTVNRLNTV 120
  121 TRVHQLMLED AVTEREVLVT PGLEFLDDTT IPVGLMAQEN SMERKVQGAA PWDTSLEVGR 180
  181 RFSPDEDFEH NNLSSMNLDF DIEEGPITSK SWEEGTRQSS RNFDTHENYI QDDDFPLDDA 240
  241 GTIGWDLGIT EKNDQNNDDD DNSVEQGRRL GESIMSEEPT DFGFDLDIEK EAPAGNIDTI 300
  301 TDAMTESQPK QTGTRRNSKL LNTKSIQIDE ETENSESIAS SNTYKEERSN NLLTPQPTNF 360
  361 TTKRLWSEIT ESMSYLPDPI LKNFLSYESL KKRKIHNGRE GSIEEPELNV SLNLTDDVIS 420
  421 NAGTNDNSFN ELTDNMSDFV PIDAGLNEAP FPEENIIDAK TRNEQTTIQT EKVRPTPGEV 480
  481 ASKAIVQMAK ILRKELSEEK EVIFTDVLKS QANTEPENIT KREASRGFFD ILSLATEGCI 540
  541 GLSQTEAFGN IKIDAKPALF ERFINA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] MSA 5.024974 View MSA. No confident structure predictions are available.
    2 View Details [211..566] deduced N/A No confident structure predictions are available.
    3 View Details [219..380] MSA 1.070972 View MSA. No confident structure predictions are available.
    4 View Details [381..566] PSI-BLAST 46.045757 Sc Smc1hd:Scc1-C complex, ATPgS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • DNA binding
    		•  3.84008666671174 bayes_pls_golite062009
  • binding
    		•  3.38086362981788 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.53725013788849 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.4191162518892 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.23378431307469 bayes_pls_golite062009
  • transcription factor activity
    		•  1.63317649552979 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.38449475025903 bayes_pls_golite062009
  • protein binding
    		•  0.961087148890615 bayes_pls_golite062009
  • transcription activator activity
    		•  0.774002575315721 bayes_pls_golite062009
  • transcription factor binding
    		•  0.68991166927379 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.683954534315832 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.52992575338445 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.349632742873003 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.140777233468428 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle