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Protein Overview: RPA43_YEAST

General Information:
Name(s) found: RPA43_YEAST [Swiss-Prot]
Description(s) found:
  • DNA-directed RNA polymerase I subunit RPA43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPA43 PE=1 SV=2 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 326 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVKRANEN RETARFIKKH KKQVTNPIDE KNGTSNCIVR VPIALYVSLA PMYLENPLQG  60
   61 VMKQHLNPLV MKYNNKVGGV VLGYEGLKIL DADPLSKEDT SEKLIKITPD TPFGFTWCHV 120
  121 NLYVWQPQVG DVLEGYIFIQ SASHIGLLIH DAFNASIKKN NIPVDWTFVH NDVEEDADVI 180
  181 NTDENNGNNN NEDNKDSNGG SNSLGKFSFG NRSLGHWVDS NGEPIDGKLR FTVRNVHTTG 240
  241 RVVSVDGTLI SDADEEGNGY NSSRSQAESL PIVSNKKIVF DDEVSIENKE SHKELDLPEV 300
  301 KEDNGSEIVY EENTSESNDG ESSDSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] MSA 7.011978 View MSA. No confident structure predictions are available.
    2 View Details [184..326] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA polymerase activity
    		•  8.49996804151214 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  8.49996804151214 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  6.09236222725443 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.19036343419087 bayes_pls_golite062009
  • transferase activity
    		•  3.77083773614719 bayes_pls_golite062009
  • DNA binding
    		•  3.30555293228271 bayes_pls_golite062009
  • binding
    		•  2.49804507522731 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.13161823862861 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.98019543873486 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.93610624899943 bayes_pls_golite062009
  • structural molecule activity
    		•  1.75354740531381 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.50253120414939 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.25554419417176 bayes_pls_golite062009
  • catalytic activity
    		•  0.968175338682309 bayes_pls_golite062009
  • transcription factor activity
    		•  0.952503054446553 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.889515634362309 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.664409046490378 bayes_pls_golite062009
  • nuclease activity
    		•  0.344602655860014 bayes_pls_golite062009
  • protein binding
    		•  0.301924922589452 bayes_pls_golite062009
  • translation regulator activity
    		•  0.272395932340767 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.224702431869342 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle