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Protein Overview: gi|7494198

General Information:
Name(s) found: gi|7494198 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • pir||T18432 hypothetical protein C0365w - malaria parasite (Plasmodium falciparum) [NCBI NR]
    • Organism: Plasmodium falciparum
    Length: 532 amino acids

    Gene Ontology:
    Cellular Component: nuclear matrix [ISSLink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIICTISGQ TPEEPVISKT GYIFEKRLIE KHIINYGICP VSGEVLTLED LYPIKNEKIV  60
   61 KPRPITASSI PGLLSIFQTE WDSIISEMFS LRTHVNDIRN ELSHSLYQYD AATRVIAKLL 120
  121 KEKNGYKEEI ENLKKQIFQL KSSNDLDIYE IGLNEELLEK MQNVAKDLLI NRKKRKIDNV 180
  181 CSVEQWKDFK NTNEFNIHSS TIPGVTCITL DVNKYKYNYN DDHMKHNFFS GGNDGNVYYV 240
  241 SLNDNKILSK LQGHLKKVNS IISHPSNFIC ITASNDKTIR IWKGDDNNVH HNDNGDSDSD 300
  301 NNNNNNDNDG SHLNNNEYIY DNYQFVSAHV ITKHKDHVTS LALHPLENYF ISSSKDSMWI 360
  361 LHDLETAKTI KTSKDNPSSF KHLAIHPDGM MFGIAAQDSN IHIYDIKSQE YKATLNGHTK 420
  421 SLNCLSFSEN GYYLASSSKD NTVKLWDLRK AQSFQTITLN ETPNFISFDY SGKYLSIAVE 480
  481 NDIQIYNFET KNQANLIKTL SSHTDIVTQT CFGSTTSYIL SSSMDKTIKL WN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] PSI-BLAST 3.522879 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    2 View Details [79..174] Pfam 38.657577 No description for PF08606.2 was found. No confident structure predictions are available.
    3 View Details [175..242] PSI-BLAST 32.221849 Crystal Structure Of The C-Terminal WD40 Domain Of Sif2
    4 View Details [243..532] PSI-BLAST 66.522879 No description for 2gnqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  10.2497392096259 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  10.0460587929138 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  8.99384576623969 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  7.6988425139962 bayes_pls_golite062009
    		• 4.77196423114965 bayes_pls_golite062009
  • ligase activity
    		•  3.92677358871643 bayes_pls_golite062009
  • RNA binding
    		•  3.04658201081989 bayes_pls_golite062009
  • binding
    		•  2.78710909602478 bayes_pls_golite062009
  • protein binding
    		•  2.64803540957326 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.12284841254268 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.62076236255768 bayes_pls_golite062009
  • ubiquitin-ubiquitin ligase activity
    		•  1.37401357060257 bayes_pls_golite062009
  • SUMO polymer binding
    		•  1.35029474687034 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.22180889694654 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  1.2126425713931 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  1.03469202541773 bayes_pls_golite062009
  • DNA binding
    		•  1.00346149950987 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.517687629465752 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  0.50197530717959 bayes_pls_golite062009
  • transcription factor binding
    		•  0.39685947299825 bayes_pls_golite062009
  • transcription factor activity
    		•  0.382098789505496 bayes_pls_golite062009
  • ubiquitin thiolesterase activity
    		•  0.265769062717221 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • transcription activator activity
    		•  0.108427457796064 bayes_pls_golite062009
  • enzyme binding
    		•  0.104373352314595 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle