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Protein Overview: CCH11_ARATH

General Information:
Name(s) found: CCH11_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75162701|sp|Q8W5S1.1|CCH11_ARATH RecName: Full=Cyclin-H1-1; Short=CycH1;1 [NCBI NR]
  • gi|26452432|dbj|BAC43301.1| putative cyclin H AtCycH1 [Arabidopsis thaliana] [NCBI NR]
  • gi|22327103|ref|NP_198114.2| CYCH;1 (CYCLIN H;1); cyclin-dependent protein kinase/ protein binding / protein kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|17026115|dbj|BAB72144.1| cyclin H [Arabidopsis thaliana] [NCBI NR]
  • Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1 [Swiss-Prot]
  • putative cyclin H AtCycH1 [Arabidopsis thaliana]gi|22327103|ref|NP_198114.2| cyclin family protein [Arabidopsis thaliana]gi|17026115|dbj|BAB72144.1| cyclin H [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cyclin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CYCH;1 | CYCH;1 (CYCLIN H;1); cyclin-dependent protein kinase/ protein binding / protein kinase | chr5:9771765-9774687 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative cyclin H AtCycH1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CYCH;1; cyclin-dependent protein kinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cyclin H [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CYCH;1 | cyclin H;1 | chr5:9771762-9774684 FORWARD LENGTH=336 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 336 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    Biological Process: regulation of cell cycle [ISS]
    translational initiation [IEA]
    Molecular Function: protein binding [IPI]
    protein kinase activity [IDA]
    cyclin-dependent protein kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFQTSTQR AKWIFTPQKL AERYKAANQR AVQMLEKCGT TQVEVDASGS LTYPKDKVGS  60
   61 GDQADKKLKP LSADEERFMR AFYEAKVQEV CSAFAFPHKI QATALQYFKR FYLQWSVMQH 120
  121 HPKEIMLTCV YAACKIEENH VSAEEIGKGI NQDHRIILKY EMAVLQSLEF DLIVYAPYRA 180
  181 IEGFVNNMEE FLQARDDEIQ KLESLLKGAT AEADKVMLTD APLLFPPGQL ALASLRIANG 240
  241 VLGVIDFDRY LENIVSQPNS EHTTSELTKL LDNIEYLVKN YKCPSEKDMK HINRKLKSCL 300
  301 GHSSSHDESK KREKRSKHKS HRSSNDTPNG APPPIG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..336] PSI-BLAST 35.522879 CYCLIN H, A POSITIVE REGULATORY SUBUNIT OF CDK ACTIVATING KINASE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  6.05799411670614 bayes_pls_golite062009
  • cyclin-dependent protein kinase regulator activity
    		•  3.42865021590497 bayes_pls_golite062009
  • protein kinase regulator activity
    		•  2.96093967361332 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.795846725429 bayes_pls_golite062009
  • kinase regulator activity
    		•  2.79045953713534 bayes_pls_golite062009
  • protein binding
    		•  2.52152158357422 bayes_pls_golite062009
  • binding
    		•  2.4204867358489 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.04886889839181 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.00665312545368 bayes_pls_golite062009
  • DNA binding
    		•  1.94297811210385 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  1.69439693414478 bayes_pls_golite062009
  • transcription activator activity
    		•  1.39881476204374 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21921365719206 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.907121673967035 bayes_pls_golite062009
  • transcription factor binding
    		•  0.749278791251235 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.729629809946521 bayes_pls_golite062009
  • hydrolase activity
    		•  0.62079213929979 bayes_pls_golite062009
  • positive transcription elongation factor activity
    		•  0.42590121577004 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.138191616709499 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle