| Protein: | CCH11_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 336 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCH11_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
256.0 | [0..17] | [312..242] |
|
Region A: Residues: [1-336] |
1 11 21 31 41 51
| | | | | |
1 MADFQTSTQR AKWIFTPQKL AERYKAANQR AVQMLEKCGT TQVEVDASGS LTYPKDKVGS 60
61 GDQADKKLKP LSADEERFMR AFYEAKVQEV CSAFAFPHKI QATALQYFKR FYLQWSVMQH 120
121 HPKEIMLTCV YAACKIEENH VSAEEIGKGI NQDHRIILKY EMAVLQSLEF DLIVYAPYRA 180
181 IEGFVNNMEE FLQARDDEIQ KLESLLKGAT AEADKVMLTD APLLFPPGQL ALASLRIANG 240
241 VLGVIDFDRY LENIVSQPNS EHTTSELTKL LDNIEYLVKN YKCPSEKDMK HINRKLKSCL 300
301 GHSSSHDESK KREKRSKHKS HRSSNDTPNG APPPIG
|
| Detection Method: |  |
| Confidence: | 35.522879 |
| Match: | 1kxuA |
| Description: | CYCLIN H, A POSITIVE REGULATORY SUBUNIT OF CDK ACTIVATING KINASE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.05799411670614 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase regulator activity | 3.42865021590497 | bayes_pls_golite062009 |
| protein kinase regulator activity | 2.96093967361332 | bayes_pls_golite062009 |
| transcription regulator activity | 2.795846725429 | bayes_pls_golite062009 |
| kinase regulator activity | 2.79045953713534 | bayes_pls_golite062009 |
| protein binding | 2.52152158357422 | bayes_pls_golite062009 |
| binding | 2.4204867358489 | bayes_pls_golite062009 |
| nucleic acid binding | 2.04886889839181 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00665312545368 | bayes_pls_golite062009 |
| DNA binding | 1.94297811210385 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.69439693414478 | bayes_pls_golite062009 |
| transcription activator activity | 1.39881476204374 | bayes_pls_golite062009 |
| transcription factor activity | 1.21921365719206 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.907121673967035 | bayes_pls_golite062009 |
| transcription factor binding | 0.749278791251235 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.729629809946521 | bayes_pls_golite062009 |
| hydrolase activity | 0.62079213929979 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.42590121577004 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.138191616709499 | bayes_pls_golite062009 |
