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Protein Overview: gi|229687729, gi...

General Information:
Name(s) found: gi|229899327 [NCBI NR]
gi|229687729 [NCBI NR]
Description(s) found:
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  • gi|229899327|ref|ZP_04514470.1| DNA-binding ATP-dependent protease La [Yersinia pestis biovar Orientalis str. India 195] [NCBI NR]
  • gi|229687729|gb|EEO79802.1| DNA-binding ATP-dependent protease La [Yersinia pestis biovar Orientalis str. India 195] [NCBI NR]
    • Organism: Yersinia pestis biovar Orientalis str. India 195
    Length: 784 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPERSERIE IPVLPLRDVV VYPHMVIPLF VGREKSIRCL EAAMDHDKRI MLVAQKEAST  60
   61 DEPGINDLFS VGTVASILQM LKLPDGTVKV LVEGLQRARI TTLSDSGEHF AAQAEYLESP 120
  121 VMDDREQEVL VRTAINQFEG YIKLNKKIPP EVLASLHSID DAARLADTIA AHMPLKLNDK 180
  181 QAVLEMFDIT ERLEYLMAMM ESEIDLLQVE KRIRNRVKKQ MEKSQREYYL NEQMKAIQKE 240
  241 LGEMDDTPDE HEALKRKIEA AKMPKDAREK TEAELQKLKM MSPMSAEATV VRGYIDWMLQ 300
  301 VPWNSRSKVK KDLVKAQEVL DTDHYGLERV KDRILEYLAV QSRVSKIKGP ILCLVGPPGV 360
  361 GKTSLGQSIA KATGRQYVRM ALGGVRDEAE IRGHRRTYIG SMPGKLIQKM AKVGVKNPLF 420
  421 LLDEIDKMAS DMRGDPASAL LEVLDPEQNV AFNDHYLEVD YDLSDVMFVA TSNSMNIPAP 480
  481 LLDRMEVIRL SGYTEDEKLN IAKQHLLPKQ FERNAIKKGE LTIDDSAIMS IIRYYTREAG 540
  541 VRSLEREISK LCRKAVKNLL MDKTVKHIEI NGDNLKDFLG VQKVDYGRAD TENRVGQVTG 600
  601 LAWTEVGGDL LTIETACVPG KGKLTYTGSL GEVMQESIQA ALTVVRARAD KLGINPDFYE 660
  661 KRDIHVHVPE GATPKDGPSA GIAMCTALVS CLTGNPVRAD VAMTGEITLR GLVLPIGGLK 720
  721 EKLLAAHRGG IKVVLIPDDN KRDLEEIPDN VIADLEIHPV KRIDDVLAIA LEHPAFGAQP 780
  781 VAPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] PSI-BLAST 27.39794 Crystal structure of N-terminal domain of E.Coli Lon Protease
    2 View Details [122..199] FFAS03 1.88 Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
    3 View Details [200..306] FFAS03 1.91 Complex of Hsp90 and P50
    4 View Details [307..396] PSI-BLAST 3.39794 No description for 2c9oA was found.
    5 View Details [397..493] FFAS03 2.26 N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
    6 View Details [494..586] PSI-BLAST 7.0 alpha-domain of ATPase
    7 View Details [587..653] Pfam 7.886057 No description for PF05362.4 was found. No confident structure predictions are available.
    8 View Details [654..784] PSI-BLAST 42.69897 Catalytic domain of E.coli Lon protease

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.06253923016595 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.436354359069435 bayes_pls_golite062009
  • catalytic activity
    		•  0.147263815852997 bayes_pls_golite062009
  • protein binding
    		•  0.124422697243688 bayes_pls_golite062009
  • DNA binding
    		•  0.109973109354783 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0749443638226208 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • hydrolase activity
    		•  2.18454736627863 bayes_pls_golite062009
  • binding
    		•  1.95152348156631 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.775560967092349 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.428373955572763 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.424644011903671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.424583288440993 bayes_pls_golite062009
  • nucleotide binding
    		•  0.422354428195324 bayes_pls_golite062009
  • DNA binding
    		•  0.226110787229935 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.22341412535263 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.222180491809685 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.219296317139543 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.194147556947887 bayes_pls_golite062009
  • ATP binding
    		•  0.04834397972685 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.0149501427627318 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.00365326483311895 bayes_pls_golite062009
    7 No functions predicted.
    8
    Term Confidence Notes
  • hydrolase activity
    		•  1.18773479836745 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.18642233210148 bayes_pls_golite062009
  • structural molecule activity
    		•  0.95398657951177 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.927662190590087 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • binding
    		•  0.806477220933291 bayes_pls_golite062009
  • peptidase activity
    		•  0.46678532223973 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.417420176258912 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.41034151894281 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.343836551142441 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.321834241843501 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.161393552073973 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0234248386796159 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle