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Protein Overview: P24D5_ARATH

General Information:
Name(s) found: P24D5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|21387055|gb|AAM47931.1| transmembrane protein-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20260194|gb|AAM12995.1| similar to transmembrane protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15219136|ref|NP_173608.1| emp24/gp25L/p24 family protein [Arabidopsis thaliana] [NCBI NR]
  • Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1 [Swiss-Prot]
  • transmembrane protein-like protein [Arabidopsis thaliana]gi|20260194|gb|AAM12995.1| similar to transmembrane protein [Arabidopsis thaliana]gi|15219136|ref|NP_173608.1| emp24/gp25L/p24 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Emp24/gp25L/p24 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | emp24/gp25L/p24 family protein | chr1:7691154-7692316 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • transmembrane protein-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • similar to transmembrane protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein carrier [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:7691165-7692327 REVERSE LENGTH=216 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 216 amino acids

    Gene Ontology:
    Cellular Component: membrane [ISS]
    integral to membrane [IEA]
    endomembrane system [IEA]
    Biological Process: intracellular protein transport [ISS]
    transport [IEA]
    Molecular Function: protein transmembrane transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINRIAHGS LFLTVVLFFL TVNYGEAIWL TIPTTGGTKC VSEEIQSNVV VLADYYVVDE  60
   61 HNPENTPAVS SKVTSPYGNN LHHQENVTHG QFAFTTQEAG NYLACFWIDS SHHLANPITL 120
  121 GVDWKMGIAA KDWDSVAKKE KIEGVELQLR RLEGLVLSIR ENLNYIKDRE AEMREVSETT 180
  181 NSRVAWFSIM SLGVCVVVVG SQILYLKRYF HKKKLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] FFAS03 0.953 No description for 2dj4A was found.
    2 View Details [149..216] MSA 6.214994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • voltage-gated cation channel activity
    		•  2.66540214971227 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  2.66283817406605 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  2.65916906094646 bayes_pls_golite062009
  • channel activity
    		•  2.65916906094646 bayes_pls_golite062009
  • cation channel activity
    		•  2.62747969257897 bayes_pls_golite062009
  • potassium channel activity
    		•  2.61371256192732 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  2.60719363833593 bayes_pls_golite062009
  • ion channel activity
    		•  2.60082350471123 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  2.58448165457823 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  2.57450407680312 bayes_pls_golite062009
  • gated channel activity
    		•  2.51455369837435 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  2.48447488950861 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  2.48200622858578 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  2.48200622858578 bayes_pls_golite062009
  • transporter activity
    		•  2.35657262831396 bayes_pls_golite062009
  • clathrin binding
    		•  2.30826135071113 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.25147059981728 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.22751878261824 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.14804562881998 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.08500207462933 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.02275538762334 bayes_pls_golite062009
  • binding
    		•  1.96281708074635 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  1.9397436784802 bayes_pls_golite062009
  • protein binding
    		•  1.30086551295862 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.921436605338431 bayes_pls_golite062009
  • actin binding
    		•  0.852579554611056 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.525578079825295 bayes_pls_golite062009
  • signal transducer activity
    		•  0.525578079825295 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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