YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P24D5_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINRIAHGS LFLTVVLFFL TVNYGEAIWL TIPTTGGTKC VSEEIQSNVV VLADYYVVDE  60
   61 HNPENTPAVS SKVTSPYGNN LHHQENVTHG QFAFTTQEAG NYLACFWIDS SHHLANPITL 120
  121 GVDWKMGIAA KDWDSVAKKE KIEGVELQLR RLEGLVLSIR ENLNYIKDRE AEMREVSETT 180
  181 NSRVAWFSIM SLGVCVVVVG SQILYLKRYF HKKKLI

Type	Start	End	Confidence
Signal Peptide	1	27	0.85
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	183	0.99
Transmembrane Helix	184	206	0.94
Cytoplasmic	207	216	0.96