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Protein Overview: gi|30687772, gi|...

General Information:
Name(s) found: gi|30687772 [NCBI NR]
gi|21360395 [NCBI NR]
gi|17979475 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|30687772|ref|NP_189151.2| nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21360395|gb|AAM47313.1| AT3g25150/MJL12_9 [Arabidopsis thaliana] [NCBI NR]
  • gi|17979475|gb|AAL50074.1| AT3g25150/MJL12_9 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 488 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleocytoplasmic transport [ISS]
    transport [IEA]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT  60
   61 STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT GYLTGKDSVR RTFSQTFFLA 120
  121 PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE 180
  181 NHAVKQTEVL SKSINEPEKV FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE 240
  241 IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN 300
  301 ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES 360
  361 ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG VNTGYRNEGG RGRGSFGGGR 420
  421 GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD 480
  481 APRVSVAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 42.154902 Nuclear transport factor-2 (NTF2)
    2 View Details [150..219] deduced N/A No confident structure predictions are available.
    3 View Details [220..396] PSI-BLAST 37.221849 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    4 View Details [397..488] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.52411158739487 bayes_pls_golite062009
  • protein binding
    		•  1.34243535208605 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.983337869604082 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.943230024413466 bayes_pls_golite062009
  • protein kinase activity
    		•  0.908756190984709 bayes_pls_golite062009
  • kinase activity
    		•  0.871357091497469 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  0.797931524291551 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.662760637049546 bayes_pls_golite062009
  • protein transporter activity
    		•  0.589427962569248 bayes_pls_golite062009
  • transferase activity
    		•  0.250005906709975 bayes_pls_golite062009
  • small GTPase binding
    		•  0.16703540602196 bayes_pls_golite062009
  • GTPase binding
    		•  0.15019810567677 bayes_pls_golite062009
  • RNA binding
    		•  0.0249242685927196 bayes_pls_golite062009
  • Ran GTPase binding
    		•  0.00865430275335055 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.30589046985932 bayes_pls_golite062009
  • RNA binding
    		•  2.47430823231895 bayes_pls_golite062009
  • mRNA binding
    		•  1.30169099150772 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.05940204883369 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.820424093184117 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.600374288145298 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.400831329848221 bayes_pls_golite062009
  • DNA binding
    		•  0.341018037712367 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle