| Protein: | gi|30687772, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 488 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30687772, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
296.0 | [0..18] | [488..3] |
|
Region A: Residues: [1-149] |
1 11 21 31 41 51
| | | | | |
1 MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT 60
61 STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT GYLTGKDSVR RTFSQTFFLA 120
121 PQETGYFVLN DMFRFIDEGT VVHGNQIPV
|
| Detection Method: |  |
| Confidence: | 42.154902 |
| Match: | 1a2kA |
| Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.52411158739487 | bayes_pls_golite062009 |
| protein binding | 1.34243535208605 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.983337869604082 | bayes_pls_golite062009 |
| nucleic acid binding | 0.943230024413466 | bayes_pls_golite062009 |
| protein kinase activity | 0.908756190984709 | bayes_pls_golite062009 |
| kinase activity | 0.871357091497469 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.797931524291551 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.662760637049546 | bayes_pls_golite062009 |
| protein transporter activity | 0.589427962569248 | bayes_pls_golite062009 |
| transferase activity | 0.250005906709975 | bayes_pls_golite062009 |
| small GTPase binding | 0.16703540602196 | bayes_pls_golite062009 |
| GTPase binding | 0.15019810567677 | bayes_pls_golite062009 |
| RNA binding | 0.0249242685927196 | bayes_pls_golite062009 |
| Ran GTPase binding | 0.00865430275335055 | bayes_pls_golite062009 |
|
Region A: Residues: [150-219] |
1 11 21 31 41 51
| | | | | |
1 NNVQAPVNTY QDTAAAKEIP DDFVQEKYVQ ENHAVKQTEV LSKSINEPEK VFTPSEDEQV 60
61 SAAEEALVTE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [220-396] |
1 11 21 31 41 51
| | | | | |
1 TVNEAPIEVQ KVGESDSRTG EIPKRSYASI VKVMKENAAP MSASRTPTKV EPKKQEDQAI 60
61 HIPLPTPLSE KSDSGANVAV NENNQENERA LGPSIYLKGL PLDATPALLE NEFQKFGLIR 120
121 TNGIQVRSQK GFCFGFVEFE SASSMQSAIE ASPVMLNGHK VVVEEKRSTA RGNYRGR
|
| Detection Method: | |
| Confidence: | 37.221849 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| nucleic acid binding | 3.30589046985932 | bayes_pls_golite062009 |
| RNA binding | 2.47430823231895 | bayes_pls_golite062009 |
| mRNA binding | 1.30169099150772 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.05940204883369 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.820424093184117 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.600374288145298 | bayes_pls_golite062009 |
| transcription regulator activity | 0.400831329848221 | bayes_pls_golite062009 |
| DNA binding | 0.341018037712367 | bayes_pls_golite062009 |
|
Region A: Residues: [397-488] |
1 11 21 31 41 51
| | | | | |
1 STFGVNTGYR NEGGRGRGSF GGGRGGYGRT DFNGYGNNRG NNRGGYANRA NGDGGGFPRA 60
61 NGNNGRVRRG GGNDANRATK PVDDAPRVSV AA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
