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Protein Overview: XRCC2_ARATH

General Information:
Name(s) found: XRCC2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|55583880|sp|Q682D3.2|XRCC2_ARATH RecName: Full=DNA repair protein XRCC2 homolog; AltName: Full=X-ray repair cross-complementing protein 2 homolog; Short=AtXRCC2 [NCBI NR]
  • gi|30698038|ref|NP_851268.1| XRCC2 [Arabidopsis thaliana] [NCBI NR]
  • gi|27524915|emb|CAD12880.1| putative X-ray repair cross-complementing protein 2 [Arabidopsis thaliana] [NCBI NR]
  • DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2 [Swiss-Prot]
  • putative X-ray repair cross-complementing protein 2 [Arabidopsis thaliana]gi|30698038|ref|NP_851268.1| DNA repair protein-related [Arabidopsis thaliana]gi|55583880|sp|Q682D3|XRC2_ARATH DNA-repair protein XRCC2 homolog (X-ray repair cross-complementing p [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform 1 of DNA-repair protein XRCC2 homolog [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: XRCC2 | XRCC2 (Arabidopsis thaliana homolog of XRCC2) | chr5:25805295-25807430 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative X-ray repair cross-complementing protein 2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • XRCC2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA-repair protein XRCC2 homolog (X-ray repair cross-complementing protein 2 homolog) (AtXRCC2) [nr-271106-contam.fasta]
  • | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair cross complementing 2 (XRCC2) | chr5:25788069-25790204 FORWARD LENGTH=372 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 372 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: reciprocal meiotic recombination [IMP]
    double-strand break repair via homologous recombination [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDDEARSWI RGDETAKQML SRVLKDRAFL LIPPLHRVPL RAGNVVEITG ASTSAKTQIL  60
   61 IQAAISCILP KTWNGIHYGG LGKLVLFLDL DCRFDVLRLS QMLKHRLLQA NWLGNGAWWQ 120
  121 LEESNVKSCK SAEEKTKTVF DEELYASCMK RFLYVRCYDS LELLSSLKTL HYRIQQQEAC 180
  181 GSQVGVLMID SIGAFHWTDR LSSSLALETH NRKSLSLTNV VETIVQELKK LLLVHSLVVL 240
  241 ATKGTIYEEK YPANENNRKV SSNDHFSGNV ASKAQQPPFR EFMPSSWQAF VTHKIIIRKS 300
  301 ADYQSLQTGQ QNLLAYSLEW LQPQLSRIDR FIVDDVRKLT TIKPFYSKLL LIYIVIPASS 360
  361 SHAVWYCHCL VT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..372] PSI-BLAST 61.522879 Rad51 (RadA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • binding
    		•  1.30574971150356 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18412998130788 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.16998111465319 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.16375481834344 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.15942143195918 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.15882580213621 bayes_pls_golite062009
  • ATPase activity
    		•  0.62253664120117 bayes_pls_golite062009
  • protein binding
    		•  0.502813311049029 bayes_pls_golite062009
  • helicase activity
    		•  0.00674361801283974 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle