YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: XRCC2_ARATH
Organism: Arabidopsis thaliana
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XRCC2_ARATH.

Description E-value Query
Range
Subject
Range
gi|10178055 - gi|10178055|dbj|BAB11419.1| unnamed protein product [Arabidopsis thaliana]
307.0 [0..1] [372..1]

Back

Predicted Domain #1
Region A:
Residues: [1-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDDEARSWI RGDETAKQML SRVLKDRAFL LIPPLHRVPL RAGNVVEITG ASTSAKTQIL  60
   61 IQAAISCILP KTWNGIHYGG LGKLVLFLDL DCRFDVLRLS QMLKHRLLQA NWLGNGAWWQ 120
  121 LEESNVKSCK SAEEKTKTVF DEELYASCMK RFLYVRCYDS LELLSSLKTL HYRIQQQEAC 180
  181 GSQVGVLMID SIGAFHWTDR LSSSLALETH NRKSLSLTNV VETIVQELKK LLLVHSLVVL 240
  241 ATKGTIYEEK YPANENNRKV SSNDHFSGNV ASKAQQPPFR EFMPSSWQAF VTHKIIIRKS 300
  301 ADYQSLQTGQ QNLLAYSLEW LQPQLSRIDR FIVDDVRKLT TIKPFYSKLL LIYIVIPASS 360
  361 SHAVWYCHCL VT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.522879
Match: 1pznA
Description: Rad51 (RadA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.37148167194523 bayes_pls_golite062009
binding 1.30574971150356 bayes_pls_golite062009
hydrolase activity 1.18412998130788 bayes_pls_golite062009
pyrophosphatase activity 1.16998111465319 bayes_pls_golite062009
nucleoside-triphosphatase activity 1.16375481834344 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.15942143195918 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.15882580213621 bayes_pls_golite062009
ATPase activity 0.62253664120117 bayes_pls_golite062009
protein binding 0.502813311049029 bayes_pls_golite062009
helicase activity 0.00674361801283974 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle