YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|28393492, gi|...

General Information:
Name(s) found: gi|30690594 [NCBI NR]
gi|28393492 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|30690594|ref|NP_564321.2| peptidase C1A papain family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28393492|gb|AAO42167.1| putative cysteine proteinase [Arabidopsis thaliana] [NCBI NR]
  • putative cysteine proteinase [Arabidopsis thaliana]gi|30690594|ref|NP_564321.2| peptidase C1A papain family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peptidase C1A papain family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | peptidase C1A papain family protein | chr1:10163089-10164371 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cysteine-type endopeptidase/ cysteine-type peptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative cysteine proteinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine proteinases superfamily protein | chr1:10163103-10164385 REVERSE LENGTH=355 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine proteinase-like protein OS=Arabidopsis thaliana GN=At1g29090 PE=2 SV=1 [ARATH-contam.fasta]
  • Cysteine proteinases superfamily protein OS=Arabidopsis thaliana GN=At1g29090 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 355 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: cysteine-type endopeptidase activity [IEA]
    cysteine-type peptidase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDSFINNKM TSILFMLVSL TILSMNLKVS QATSRVTFHE PIVAEHHQQW MTRFSRVYSD  60
   61 ELEKQMRFDV FKKNLKFIEK FNKKGDRTYK LGVNEFADWT REEFIATHTG LKGVNGIPSS 120
  121 EFVDEMIPSW NWNVSDVAGR ETKDWRYEGA VTPVKYQGQC GCCWAFSSVA AVEGLTKIVG 180
  181 NNLVSLSEQQ LLDCDRERDN GCNGGIMSDA FSYIIKNRGI ASEASYPYQA AEGTCRYNGK 240
  241 PSAWIRGFQT VPSNNERALL EAVSKQPVSV SIDADGPGFM HYSGGVYDEP YCGTNVNHAV 300
  301 TFVGYGTSPE GIKYWLAKNS WGETWGENGY IRIRRDVAWP QGMCGVAQYA FYPVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..355] PSI-BLAST 77.522879 CRYSTAL STRUCTURE OF A CYSTEINE PROTEASE PROFORM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  4.90619850296986 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.64381885397949 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.75054525912786 bayes_pls_golite062009
  • hydrolase activity
    		•  3.74079711298952 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  2.71117522993364 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  1.95802900199539 bayes_pls_golite062009
  • binding
    		•  1.29265216891074 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.12653729823589 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • protein binding
    		•  0.774177093888744 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  0.649171767629235 bayes_pls_golite062009
  • thiolester hydrolase activity
    		•  0.59115205419466 bayes_pls_golite062009
  • kininogen binding
    		•  0.41283715939055 bayes_pls_golite062009
  • signal transducer activity
    		•  0.12644030784065 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.12644030784065 bayes_pls_golite062009
  • structural molecule activity
    		•  0.102555314244558 bayes_pls_golite062009
  • tubulin binding
    		•  0.0482209771629902 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  0.0101379718864654 bayes_pls_golite062009
  • microtubule binding
    		•  0.00635493133568055 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle