YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28393492, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDSFINNKM TSILFMLVSL TILSMNLKVS QATSRVTFHE PIVAEHHQQW MTRFSRVYSD  60
   61 ELEKQMRFDV FKKNLKFIEK FNKKGDRTYK LGVNEFADWT REEFIATHTG LKGVNGIPSS 120
  121 EFVDEMIPSW NWNVSDVAGR ETKDWRYEGA VTPVKYQGQC GCCWAFSSVA AVEGLTKIVG 180
  181 NNLVSLSEQQ LLDCDRERDN GCNGGIMSDA FSYIIKNRGI ASEASYPYQA AEGTCRYNGK 240
  241 PSAWIRGFQT VPSNNERALL EAVSKQPVSV SIDADGPGFM HYSGGVYDEP YCGTNVNHAV 300
  301 TFVGYGTSPE GIKYWLAKNS WGETWGENGY IRIRRDVAWP QGMCGVAQYA FYPVA

Type	Start	End	Confidence
Signal Peptide	1	32	0.75
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	355	0.99