Protein Overview: TBCB_ARATH

General Information:
Name(s) found:	TBCB_ARATH [Swiss-Prot]
Description(s) found: Found 11 descriptions. SHOW ALL	Tubulin-folding cofactor B OS=Arabidopsis thaliana GN=TFCB PE=1 SV=1 [Swiss-Prot]
Organism:	Arabidopsis thaliana
Length:	243 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytoplasm [IDA] phragmoplast [IDA]
Biological Process:	embryonic development [IMP] cell division [IMP] tubulin complex assembly [ISS]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSRLQLEG DDSVHLHITH ANLKSFSADA RFSPQMSVEA VKEKLWKKCG TSVNSMALEL  60
   61 YDDSGSKVAV LSDDSRPLGF FSPFDGFRLH IIDLDPSSVT TGGWLEDTSL VEKYNISEED 120
  121 YAKRTDSFRK FKEKRVSQNP VAAEAKTKEN YMEDLCANIK VGDRCQVEPG EKRGMVKYVG 180
  181 RAESLGPGYW VGIQYDEPLG KHDGMVKGTR FFECPRLQGG MVRPDKVKVG DYPERDPFEE 240
  241 DEI

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..146]	PSI-BLAST	17.69897	Solution Structure of a Ubiquitin-Like Domain from Tubulin-binding Cofactor B
2	View Details	[147..243]	PSI-BLAST	30.30103	Solution structure of the CAP-Gly domain in mouse tubulin specific chaperone B

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
binding	2.19381585790185	bayes_pls_golite062009
protein binding	1.17197911794381	bayes_pls_golite062009
structural constituent of ribosome	0.599634454232833	bayes_pls_golite062009
structural molecule activity	0.576819726104993	bayes_pls_golite062009
nucleic acid binding	0.383121378043805	bayes_pls_golite062009
DNA binding	0.0840213088061073	bayes_pls_golite062009
transcription regulator activity	0.0485636215870291	bayes_pls_golite062009

2

Term	Confidence	Notes
tubulin binding	2.81573953488242	bayes_pls_golite062009
microtubule binding	2.67824962486294	bayes_pls_golite062009
binding	2.07863891614262	bayes_pls_golite062009
cytoskeletal protein binding	1.95334135428526	bayes_pls_golite062009
microtubule plus-end binding	1.16043967945651	bayes_pls_golite062009
protein binding	0.896264971703612	bayes_pls_golite062009
nucleic acid binding	0.625661567957308	bayes_pls_golite062009
DNA binding	0.336599045092266	bayes_pls_golite062009
transcription regulator activity	0.292990934444865	bayes_pls_golite062009
catalytic activity	0.069855517589921	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle