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Protein Overview: CDR1_ARATH

General Information:
Name(s) found: CDR1_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 437 amino acids

    Gene Ontology:
    Cellular Component: apoplast [IEP]
    Biological Process: proteolysis [ISS]
    regulation of salicylic acid metabolic process [IMP]
    regulation of hydrogen peroxide metabolic process [IDA][IMP]
    defense response to bacterium [IMP]
    Molecular Function: aspartic-type endopeptidase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLFSSVLL SLCLLSSLFL SNANAKPKLG FTADLIHRDS PKSPFYNPME TSSQRLRNAI  60
   61 HRSVNRVFHF TEKDNTPQPQ IDLTSNSGEY LMNVSIGTPP FPIMAIADTG SDLLWTQCAP 120
  121 CDDCYTQVDP LFDPKTSSTY KDVSCSSSQC TALENQASCS TNDNTCSYSL SYGDNSYTKG 180
  181 NIAVDTLTLG SSDTRPMQLK NIIIGCGHNN AGTFNKKGSG IVGLGGGPVS LIKQLGDSID 240
  241 GKFSYCLVPL TSKKDQTSKI NFGTNAIVSG SGVVSTPLIA KASQETFYYL TLKSISVGSK 300
  301 QIQYSGSDSE SSEGNIIIDS GTTLTLLPTE FYSELEDAVA SSIDAEKKQD PQSGLSLCYS 360
  361 ATGDLKVPVI TMHFDGADVK LDSSNAFVQV SEDLVCFAFR GSPSFSIYGN VAQMNFLVGY 420
  421 DTVSKTVSFK PTDCAKM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..437] PSI-BLAST 67.045757 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle