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Protein Overview: gi|46015905

General Information:
Name(s) found: gi|46015905 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|46015905|pdb|1UVQ|B Chain B, Crystal Structure Of Hla-Dq0602 In Complex With A Hypocretin Peptide [NCBI NR]
    • Organism: Homo sapiens
    Length: 198 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPEDFVFQFK GMCYFTNGTE RVRLVTRYIY NREEYARFDS DVGVYRAVTP QGRPDAEYWN  60
   61 SQKEVLEGTR AELDTVCRHN YEVAFRGILQ RRVEPTVTIS PSRTEALNHH NLLVCSVTDF 120
  121 YPGQIKVRWF RNDQEETAGV VSTPLIRNGD WTFQILVMLE MTPQRGDVYT CHVEHPSLQS 180
  181 PITVEWRAQS ESAQSKVD

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|112491310 gi|13786858 gi|219109210, gi... gi|46015905 gi|56554577 gi|56966260, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] PSI-BLAST 51.522879 Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptide antigen binding
    		•  5.63215326620472 bayes_pls_golite062009
  • olfactory receptor activity
    		•  4.58024710763591 bayes_pls_golite062009
  • MHC class I receptor activity
    		•  3.46497995701625 bayes_pls_golite062009
  • endogenous lipid antigen binding
    		•  3.43614151119962 bayes_pls_golite062009
  • peptide binding
    		•  3.38582773777562 bayes_pls_golite062009
  • receptor activity
    		•  2.90626534331365 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  2.76189257722839 bayes_pls_golite062009
  • antigen binding
    		•  2.27076537618453 bayes_pls_golite062009
  • lipid antigen binding
    		•  2.09050740693882 bayes_pls_golite062009
  • natural killer cell lectin-like receptor binding
    		•  2.02925074238378 bayes_pls_golite062009
  • signal transducer activity
    		•  1.90212388691264 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.90212388691264 bayes_pls_golite062009
  • binding
    		•  1.56292619248655 bayes_pls_golite062009
  • receptor binding
    		•  0.93639628171707 bayes_pls_golite062009
  • protein binding
    		•  0.901995290894522 bayes_pls_golite062009
  • exogenous lipid antigen binding
    		•  0.763929387638141 bayes_pls_golite062009
  • IgG binding
    		•  0.66334714003323 bayes_pls_golite062009
  • MHC class II receptor activity
    		•  0.251167772391909 bayes_pls_golite062009
  • G-protein coupled receptor activity
    		•  0.22724598043225 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle