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Protein Overview: SPZ1_ARATH

General Information:
Name(s) found: SPZ1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|189029934|sp|Q9SH52.2|SPZ1_ARATH RecName: Full=Serpin-Z1; AltName: Full=ArathZ1 [NCBI NR]
  • gi|15222606|ref|NP_176586.1| serpin family protein / serine protease inhibitor family protein [Arabidopsis thaliana] [NCBI NR]
  • Serpin-Z1 OS=Arabidopsis thaliana GN=At1g64030 PE=2 SV=2 [Swiss-Prot]
  • serpin family protein / serine protease inhibitor family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | serpin family protein / serine protease inhibitor family protein | chr1:23756536-23758011 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • serine-type endopeptidase inhibitor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATSRP3, SRP3 | serpin 3 | chr1:23752873-23754348 REVERSE LENGTH=385 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 385 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDA]
    Biological Process: DNA repair [IMP]
    response to DNA damage stimulus [IEP]
    Molecular Function: serine-type endopeptidase inhibitor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVREAMKNQ THVAMILSGH VLSSAPKDSN VIFSPASINS AITMHAAGPG GDLVSGQILS  60
   61 FLRSSSIDEL KTVFRELASV VYADRSATGG PKITAANGLW IDKSLPTDPK FKDLFENFFK 120
  121 AVYVPVDFRS EAEEVRKEVN SWVEHHTNNL IKDLLPDGSV TSLTNKIYAN ALSFKGAWKR 180
  181 PFEKYYTRDN DFYLVNGTSV SVPFMSSYEN QYVRAYDGFK VLRLPYQRGS DDTNRKFSMY 240
  241 FYLPDKKDGL DDLLEKMAST PGFLDSHIPT YRDELEKFRI PKFKIEFGFS VTSVLDRLGL 300
  301 RSMSMYHKAC VEIDEEGAEA AAATADGDCG CSLDFVEPPK KIDFVADHPF LFLIREEKTG 360
  361 TVLFVGQIFD PSGPCSGSNS DSDDY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..385] PSI-BLAST 88.0 Plasminogen activator inhibitor-2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • serine-type endopeptidase inhibitor activity
    		•  6.13717785773502 bayes_pls_golite062009
  • peptidase inhibitor activity
    		•  6.07523919900796 bayes_pls_golite062009
  • endopeptidase inhibitor activity
    		•  6.01194624525726 bayes_pls_golite062009
  • enzyme inhibitor activity
    		•  3.67290572457064 bayes_pls_golite062009
  • protease binding
    		•  2.69747551802498 bayes_pls_golite062009
  • enzyme regulator activity
    		•  2.47388770421699 bayes_pls_golite062009
  • binding
    		•  2.02049891212041 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  1.61358221181146 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.46959492426289 bayes_pls_golite062009
  • DNA binding
    		•  1.31854786197421 bayes_pls_golite062009
  • transporter activity
    		•  1.29851101299849 bayes_pls_golite062009
  • heparin binding
    		•  1.21540270241849 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.12659599250323 bayes_pls_golite062009
  • signal transducer activity
    		•  1.12659599250323 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.07876412297114 bayes_pls_golite062009
  • polysaccharide binding
    		•  0.99559313679422 bayes_pls_golite062009
  • type 2 angiotensin receptor binding
    		•  0.92552398196189 bayes_pls_golite062009
  • protein binding
    		•  0.851912163178726 bayes_pls_golite062009
  • thyroid hormone transmembrane transporter activity
    		•  0.812950479764802 bayes_pls_golite062009
  • receptor binding
    		•  0.531766146472648 bayes_pls_golite062009
  • receptor activity
    		•  0.374700884868838 bayes_pls_golite062009
  • collagen binding
    		•  0.307023895861541 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.262958899612658 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.23687499123534 bayes_pls_golite062009
  • growth factor activity
    		•  0.21183671094477 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle