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Protein Overview: NRPE7_ARATH

General Information:
Name(s) found: NRPE7_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|42566796|ref|NP_193202.2| NRPE7; DNA-directed RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana] [NCBI NR]
  • DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1 [Swiss-Prot]
  • RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA polymerase Rpb7 N-terminal domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA polymerase Rpb7 N-terminal domain-containing protein | chr4:8406495-8407031 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal domain | chr4:8406500-8407036 REVERSE LENGTH=178 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At4g14660 OS=Arabidopsis thaliana GN=NRPE7 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 178 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase V complex [IPI]
    Biological Process: transcription [IEA][ISS]
    Molecular Function: DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLKVQLPWN VMIPAENMDA KGLMLKRAIL VELLEAFASK KATKELGYYV AVTTLDKIGE  60
   61 GKIREHTGEV LFPVMFSGMT FKIFKGEIIH GVVHKVLKHG VFMRCGPIEN VYLSYTKMPD 120
  121 YKYIPGENPI FMNEKTSRIQ VETTVRVVVI GIKWMEVERE FQALASLEGD YLGPLSEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 32.0 C-terminal domain of RNA polymerase II subunit RBP4 (RpoE); N-terminal, heterodimerisation domain of RBP4 (RpoE)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA polymerase activity
    		•  5.58573473432218 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  5.58573473432218 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.87899047526266 bayes_pls_golite062009
  • DNA binding
    		•  3.47278447192966 bayes_pls_golite062009
  • binding
    		•  3.35781855253373 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  3.34659726705133 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.11041791332208 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.10110937001387 bayes_pls_golite062009
  • transferase activity
    		•  2.03373182784225 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.81524862921454 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.62996999055328 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.51215866188241 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.19236946227657 bayes_pls_golite062009
  • structural molecule activity
    		•  1.16496993393687 bayes_pls_golite062009
  • transcription factor activity
    		•  0.937752547283357 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.76825863122436 bayes_pls_golite062009
  • protein binding
    		•  0.767256907671421 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.583085644017496 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • translation regulator activity
    		•  0.515576958825022 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.468402630523277 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.2080607201312 bayes_pls_golite062009
  • RNA binding
    		•  0.18502033889261 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.125256208482441 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.109774918833391 bayes_pls_golite062009
  • chromatin binding
    		•  0.0075451629397203 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle