| Protein: | sv-PC |
| Organism: | Drosophila melanogaster |
| Length: | 647 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sv-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
427.0 | [0..1] | [647..1] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MLIMDIQTST HHIHGLGTHE LQHRILHPHI LHSTQEETLN TSTGQLEHDS QHLQQHHLTH 60
61 HQQQDVSPTL HNLQNTRTGD SLSTTINTNQ NQHGHQHLSG SNMYTSSQME DKSKANKYDE 120
121 YSSRTLSNIS DANTTPSANN FITQSQGIEW ITAMNDIQNG A
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-309] |
1 11 21 31 41 51
| | | | | |
1 EDSHSSQGSI SGDGHGGVNQ LGGVFVNGRP LPDVVRQRIV ELAHNGVRPC DISRQLRVSH 60
61 GCVSKILSRY YETGSFKAGV IGGSKPKVAT PPVVDAIANY KRENPTMFAW EIRDRLLAEA 120
121 ICSQDNVPSV SSINRIVRNK AAEKAKHV
|
| Detection Method: | |
| Confidence: | 60.0 |
| Match: | 1k78A |
| Description: | Pax-5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [310-427] |
1 11 21 31 41 51
| | | | | |
1 HHHQQHHVSQ SLGGGHIATE SVDSSTGTIG EPQPPTSNSS ANSVNTNVSA SASVHASIPT 60
61 SGTDSVQVSV GHINANSNET THINSTAEQR TTGYSINGIL GIQHGHHSHN NNNNSSVN
|
| Detection Method: | |
| Confidence: | 1.08 |
| Match: | 2apoA |
| Description: | Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.32498104079149 | bayes_pls_golite062009 |
| nucleic acid binding | 2.0340444056235 | bayes_pls_golite062009 |
| DNA binding | 1.96520460315172 | bayes_pls_golite062009 |
| pseudouridine synthase activity | 1.95827425471645 | bayes_pls_golite062009 |
| catalytic activity | 1.86133205308688 | bayes_pls_golite062009 |
| binding | 1.39195733615426 | bayes_pls_golite062009 |
| transcription activator activity | 1.27714242179739 | bayes_pls_golite062009 |
| protein binding | 1.14602657647498 | bayes_pls_golite062009 |
| intramolecular transferase activity | 0.667162168337187 | bayes_pls_golite062009 |
| isomerase activity | 0.567803132409133 | bayes_pls_golite062009 |
|
Region A: Residues: [428-647] |
1 11 21 31 41 51
| | | | | |
1 NNNNTESSCK RKRIEAHDEN HDTNIHSDND DGKRQRMSTY SGDQLYTNIW SGKWCIKDDH 60
61 KLLAELGNLT ASTGNCPATY YEASNGFSTT PISGSGATAS GNDTSMLYDS ITTISQTQSS 120
121 IYTPAIGPSI GCSSVVPGSD YAYNPAYTQY GGAYGSYGYG TGSGLINSSY YYESGQTQSP 180
181 LTHDLRSPLV ATRANSLASA ASPGSGSACT KSESSDIFLA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
