| Protein: | Trc8-PD |
| Organism: | Drosophila melanogaster |
| Length: | 809 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Trc8-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
706.0 | [0..1] | [809..1] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MSVRTKVLGL VDVMMRVPPV MVIDEILKMD MGMQSWLYPD KDKASGALAT PTEAPAVPSG 60
61 QDPFTSIKEL FSHMTTSAQS VLEQSIEKAS EAAKTHGMLS SGFNSLMNEL SK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [113-307] |
1 11 21 31 41 51
| | | | | |
1 DQTLADVLST TTVKFVLCVF AFLSAACIFM LWTRHLVMVY MFLTSLGLTF LSYWSNVSAL 60
61 ALTERSPSMV EDLMSLNTTR LLDSGGVVMS LAPHLMAQWF MGMLFAYIHL GPRFEHVQRS 120
121 MPIIFASPIL LAMLPLPAKV VQHLPVVAVF TPIILTKITL MQSAMEASRT VYNGYQYAMN 180
181 FVSNFGLSAL IENEW
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [308-516] |
1 11 21 31 41 51
| | | | | |
1 QRLNVPNVLR VFWTIRLIQG GYALATTESD EPLDLMTATQ KLLVDGCETM TAVLGMTGVI 60
61 SMFCHYIGRG FQWYLLTYDD EEKSLGTVSA VLFYILALQT GLTSLSPDKR FIRLCRNLCL 120
121 LMTALLHFLH NIVSPILMSL SAARNPSRKR HVRALSVCAF LVVLSVSLLY HLWSQQSIST 180
181 WLLAVTAFSV EVVVKVLVSL ATYTLFLLD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [517-606] |
1 11 21 31 41 51
| | | | | |
1 ARRQFFWEKL DDYLYYVRAF GNSVEFCFGI LLFINGAWIL IFESAQNATG GGIRAIMMCI 60
61 HAYFNIWCEA RAGWSVFMKR RSAVHKISAL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [607-727] |
1 11 21 31 41 51
| | | | | |
1 PEATPAQLQA FDDVCAICYQ EMYSAKITRC RHFFHGVCLR KWLYVQDRCP LCHEIMMYTD 60
61 KADENAPEAE PAPAAQAEQP MRIYPRDDAN NAAAQRRSPE RAPVEASEQA PATSSSSAAA 120
121 T
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 1rmdA |
| Description: | RAG1 DIMERIZATION DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.15929427993458 | bayes_pls_golite062009 |
| protein binding | 1.49775478023418 | bayes_pls_golite062009 |
| chromatin binding | 0.68064699307727 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.587037280321105 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.457219654632707 | bayes_pls_golite062009 |
| transcription factor binding | 0.40077737329629 | bayes_pls_golite062009 |
| transcription regulator activity | 0.181063140818134 | bayes_pls_golite062009 |
|
Region A: Residues: [728-809] |
1 11 21 31 41 51
| | | | | |
1 IGAEAVSAIV ESAAAVGEAR SLVSVASSSS ATHRISASGS SDSSYMTASA QSPPPTATSA 60
61 AAVATAAASN TTHMFRMSQD QQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
