YRC Public Data Repository - Protein Structure Prediction

Protein:	YDDR_ECOLI
Organism:	Escherichia coli
Length:	340 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDDR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46196899, gi\|... - gi\|46199274\|ref\|YP_004941.1\| dipeptide transport system permease protein dppB [Thermus thermophilus ...	302.0	[0..2]	[337..4]
gi\|68342559, gi\|... - gi\|70728260\|ref\|YP_258009.1\| dipeptide ABC transporter, permease protein [Pseudomonas fluorescens Pf...	294.0	[0..2]	[338..18]
gi\|78044226, gi\|... - gi\|78044226\|ref\|YP_359975.1\| oligopeptide/dipeptide ABC transporter, permease protein [Carboxydother...	294.0	[0..3]	[336..1]
gi\|24982296, gi\|... - gi\|26987617\|ref\|NP_743042.1\| alkaline phosphatase [Pseudomonas putida KT2440], gi\|24982296\|gb\|AAN665... gi\|148546163, gi... - gi\|82736045\|ref\|ZP_00898906.1\| dipeptide ABC transporter, permease protein [Pseudomonas putida F1], ... tr\|I7AY84\|I7AY84... - Alkaline phosphatase OS=Pseudomonas putida (strain DOT-T1E) GN=dppB PE=3 SV=1	293.0	[0..3]	[338..1]
gi\|95109259 - gi\|95109259\|emb\|CAK13956.1\| dipeptide ABC transporter, permease protein [Pseudomonas entomophila L48... gi\|95109259, gi\|... - gi\|95109259\|emb\|CAK13956.1\| dipeptide ABC transporter, permease protein [Pseudomonas entomophila L48...	293.0	[0..3]	[338..1]
gi\|56909252, gi\|... - gi\|56963013\|ref\|YP_174740.1\| oligopeptide ABC transporter permease [Bacillus clausii KSM-K16], gi\|56...	292.0	[0..3]	[336..1]
gi\|218773823, gi... - gi\|218893595\|ref\|YP_002442464.1\| putative permease of ABC transporter [Pseudomonas aeruginosa LESB58... gi\|126198063, gi... - gi\|254244685\|ref\|ZP_04938007.1\| permease of ABC transporter [Pseudomonas aeruginosa 2192], gi\|194555... gi\|116052534, gi... - gi\|116052534\|ref\|YP_792848.1\| ABC transporter permease [Pseudomonas aeruginosa UCBPP-PA14], gi\|11558...	292.0	[0..3]	[338..1]
gi\|25321274 - pir\|\|C84105 dipeptide ABC transporter (permease) BH3643 [imported] - Bacillus halodurans (strain C-1... gi\|15616205, gi\|... - gi\|15616205\|ref\|NP_244510.1\| dipeptide ABC transporter (permease) [Bacillus halodurans C-125], gi\|10...	292.0	[0..3]	[336..1]
gi\|115265533 - gi\|115265533\|dbj\|BAF32795.1\| permease of dipeptide ABC transporter [Pseudomonas syringae pv. actinid...	292.0	[0..3]	[338..1]
DPPB_BACPF - Dipeptide transport system permease protein dppB OS=Bacillus pseudofirmus GN=dppB PE=3 SV=1 gi\|11279742, gi\|... - gi\|1813496\|gb\|AAB41689.1\| dipeptide transporter protein DppB [Bacillus firmus], pir\|\|T44636 dipeptid... DPPB_BACPE - Dipeptide transport system permease protein DppB OS=Bacillus pseudofirmus (strain OF4) GN=dppB PE=3 ...	292.0	[0..3]	[336..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFWSILRQR CWGLVLVVAG VCVITFIISH LIPGDPARLL AGDRASDAIV ENIRQQLGLD  60
   61 QPLYVQFYRY VSDLFH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-340]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLGTSIRTG RPVLEELRIF FPATLELAFG ALLLALLIGI PLGILSAVWR NRWLDHLVRI  60
   61 MAITGISTPA FWLGLGVIVL FYGHLQILPG GGRLDDWLDP PTHVTGFYLL DALLEGNGEV 120
  121 FFNALQHLIL PALTLAFVHL GIVARQIRSA MLEQLSEDYI RTARASGLPG WYIVLCYALP 180
  181 NALIPSITVL GLALGDLLYG AVLTETVFAW PGMGAWVVTS IQALDFPAVM GFAVVVSFAY 240
  241 VLVNLVVDLL YLWIDPRIGR GGGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.61517440483825	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.61475955752567	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.61475955752567	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.60261285611608	bayes_pls_golite062009
primary active transmembrane transporter activity	7.59280303111267	bayes_pls_golite062009
active transmembrane transporter activity	7.51217805691059	bayes_pls_golite062009
ATPase activity, coupled	6.95724531600418	bayes_pls_golite062009
ATPase activity	6.62620720611918	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.31173441402571	bayes_pls_golite062009
pyrophosphatase activity	6.23822548232138	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.21828378422716	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.21791205758921	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.46058403247103	bayes_pls_golite062009
ion transmembrane transporter activity	4.84048533553771	bayes_pls_golite062009
hydrolase activity	4.5940497987178	bayes_pls_golite062009
cation transmembrane transporter activity	4.17977204081224	bayes_pls_golite062009
transporter activity	4.16850252614298	bayes_pls_golite062009
transmembrane transporter activity	4.07281957844021	bayes_pls_golite062009
substrate-specific transporter activity	3.61142533583701	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.9260252024097	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	2.85525880225875	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.46453467908178	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.19359047382598	bayes_pls_golite062009
sugar transmembrane transporter activity	2.147054904918	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.12981939421008	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.90343616526346	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.6718548573993	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	1.62768691451517	bayes_pls_golite062009
maltose-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
maltose transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
disaccharide transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.54998466398412	bayes_pls_golite062009
anion transmembrane transporter activity	1.53656434391799	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.4745579365074	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.737817335114385	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.634824157502542	bayes_pls_golite062009
catalytic activity	0.350058049038907	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.314028059232496	bayes_pls_golite062009
solute:cation symporter activity	0.0914244193736007	bayes_pls_golite062009
symporter activity	0.0914244193736007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: