| Protein: | TRM2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 639 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRM2.
| Description | E-value | Query Range |
Subject Range |
|
|
528.0 | [0..14] | [583..14] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MYEQFEFSFF FFENSDNKVK YKAHLISSIK RWSIITCMRC FWTVQKSIFK ARFFACRNFV 60
61 KKHNYKLIST MTGSTEMVPP TMKHTVDNKR LSSPLTDSGN RRTKKPKLRK YKAKKVETTS 120
121 PMGVLEFEVN DLLKSQNLSR EQVLNDVTSI LNDKSSTDGP IVLQY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [166-639] |
1 11 21 31 41 51
| | | | | |
1 HREVKNVKVL EITSNGNGLA LIDNPVETEK KQVVIIPFGL PGDVVNIKVF KTHPYYVESD 60
61 LLDVVEKSPM RRDDLIRDKY FGKSSGSQLE FLTYDDQLEL KRKTIMNAYK FFAPRLVAEK 120
121 LLPPFDTTVA SPLQFGYRTK ITPHFDMPKR KQKELSVRPP LGFGQKGRPQ WRKDTLDIGG 180
181 HGSILDIDEC VLATEVLNKG LTNERRKFEQ EFKNYKKGAT ILLRENTTIL DPSKPTLEQL 240
241 TEEASRDENG DISYVEVEDK KNNVRLAKTC VTNPRQIVTE YVDGYTFNFS AGEFFQNNNS 300
301 ILPIVTKYVR DNLQAPAKGD DNKTKFLVDA YCGSGLFSIC SSKGVDKVIG VEISADSVSF 360
361 AEKNAKANGV ENCRFIVGKA EKLFESIDTP SENTSVILDP PRKGCDELFL KQLAAYNPAK 420
421 IIYISCNVHS QARDVEYFLK ETENGSAHQI ESIRGFDFFP QTHHVESVCI MKRI
|
| Detection Method: | |
| Confidence: | 77.221849 |
| Match: | 1uwvA |
| Description: | Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| methyltransferase activity | 4.15445027778357 | bayes_pls_golite062009 |
| rRNA methyltransferase activity | 4.09362182773099 | bayes_pls_golite062009 |
| N-methyltransferase activity | 4.07806017452628 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 4.07153733729662 | bayes_pls_golite062009 |
| protein methyltransferase activity | 3.92746815303714 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 3.39429041855776 | bayes_pls_golite062009 |
| RNA methyltransferase activity | 3.07428840534971 | bayes_pls_golite062009 |
| histone methyltransferase activity | 2.99461585647365 | bayes_pls_golite062009 |
| single-stranded DNA binding | 2.93712042261633 | bayes_pls_golite062009 |
| tRNA methyltransferase activity | 2.5931020126592 | bayes_pls_golite062009 |
| protein-arginine N-methyltransferase activity | 2.41876112831625 | bayes_pls_golite062009 |
| arginine N-methyltransferase activity | 2.41876112831625 | bayes_pls_golite062009 |
| transferase activity | 2.22303238506686 | bayes_pls_golite062009 |
| DNA-methyltransferase activity | 2.18991764495147 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 2.04350689362549 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 2.04350689362549 | bayes_pls_golite062009 |
| histone-arginine N-methyltransferase activity | 2.04296107639729 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 2.04218282227834 | bayes_pls_golite062009 |
| tRNA (cytosine)-methyltransferase activity | 1.88889414729709 | bayes_pls_golite062009 |
| tRNA (cytosine-5-)-methyltransferase activity | 1.88889414729709 | bayes_pls_golite062009 |
| rRNA (adenine) methyltransferase activity | 1.83964463328968 | bayes_pls_golite062009 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 1.75675289134467 | bayes_pls_golite062009 |
| protein-arginine omega-N monomethyltransferase activity | 1.66871163498737 | bayes_pls_golite062009 |
| tRNA (adenine-N1-)-methyltransferase activity | 1.29759910099835 | bayes_pls_golite062009 |
| tRNA (adenine)-methyltransferase activity | 1.29759910099835 | bayes_pls_golite062009 |
| catalytic activity | 1.25333584501255 | bayes_pls_golite062009 |
| histone methyltransferase activity (H4-R3 specific) | 1.1103522853299 | bayes_pls_golite062009 |
| rRNA (guanine) methyltransferase activity | 1.10713374933008 | bayes_pls_golite062009 |
| ligase activity | 1.06979791212194 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.943661008731946 | bayes_pls_golite062009 |
| transcription regulator activity | 0.914549843668268 | bayes_pls_golite062009 |
| protein-arginine omega-N asymmetric methyltransferase activity | 0.89325812193225 | bayes_pls_golite062009 |
| DNA binding | 0.86027591375666 | bayes_pls_golite062009 |
| site-specific DNA-methyltransferase (adenine-specific) activity | 0.703178429468566 | bayes_pls_golite062009 |
| ribonuclease activity | 0.702449673647117 | bayes_pls_golite062009 |
| nucleic acid binding | 0.616949327277483 | bayes_pls_golite062009 |
| structural molecule activity | 0.596857566298868 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.504302440847948 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.449277083957511 | bayes_pls_golite062009 |
| RNA binding | 0.417524996559564 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.40223812695012 | bayes_pls_golite062009 |
| binding | 0.383237930789959 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.32084431704638 | bayes_pls_golite062009 |
| transcription factor activity | 0.298729064067577 | bayes_pls_golite062009 |
| O-methyltransferase activity | 0.250946859465502 | bayes_pls_golite062009 |
| rRNA (guanine-N1-)-methyltransferase activity | 0.234572322347698 | bayes_pls_golite062009 |
| translation regulator activity | 0.22908707234671 | bayes_pls_golite062009 |
| tRNA (guanine) methyltransferase activity | 0.203168546434167 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.179682348023561 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.13299060447839 | bayes_pls_golite062009 |
