YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10120437, gi\|...
Organism:	Arabidopsis thaliana
Length:	629 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10120437, gi|....

Description	E-value	Query Range	Subject Range
gi\|1361983, gi\|8... - gi\|886434\|emb\|CAA89858.1\| ARP protein [Arabidopsis thaliana], pir\|\|S57614 ARP protein - Arabidopsis ...	461.0	[0..1]	[629..1]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIKPGLSAL VTGGASGIGR ALCLALAEKG VFVTVADFSE EKGQETTSLV REANAKFHQG  60
   61 LSFPSAIFVK CDVTNRGDLL AAFDKHLATF GTLDICINNA GISTPLRFDK DDTDGSKSWK 120
  121 HTINVDLIAV VEGTQLAIKA MKAKQKPGVI INMGSAAGLY PMPVDPIYAA SKAGVVLFTR 180
  181 SLAYYRRQGI RINVLCPEFI KTDLAEAIDA SILESIGGYM SMDMLIKGAF ELITDEKKAG 240
  241 ACLWITKRRG LE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	2gdzA
Description:	No description for 2gdzA was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	3.09625241707629	bayes_pls_golite062009
retinol dehydrogenase activity	3.08644105481774	bayes_pls_golite062009
methylglyoxal reductase (NADH-dependent) activity	3.00190838171391	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	2.94416173750168	bayes_pls_golite062009
ethanol binding	2.52170309552485	bayes_pls_golite062009
alcohol binding	2.01620480773869	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
steroid dehydrogenase activity	1.75109362865449	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.65338499044318	bayes_pls_golite062009
DNA binding	1.61355789916908	bayes_pls_golite062009
transcription regulator activity	1.55390653047158	bayes_pls_golite062009
steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.55012034958204	bayes_pls_golite062009
nucleic acid binding	1.48478425318425	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.47309297191111	bayes_pls_golite062009
NADPH:quinone reductase activity	1.39375516683833	bayes_pls_golite062009
fatty acid synthase activity	1.23679054027553	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	1.22416351603098	bayes_pls_golite062009
all-trans retinal binding	1.00917731867977	bayes_pls_golite062009
binding	0.982999356179965	bayes_pls_golite062009
transcription factor activity	0.91090893050278	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	0.839863523675468	bayes_pls_golite062009
structural molecule activity	0.75267483298133	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	0.62461633437589	bayes_pls_golite062009
3-oxoacyl-[acyl-carrier-protein] reductase activity	0.604742541607263	bayes_pls_golite062009
receptor activity	0.591732115418164	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.576163737662951	bayes_pls_golite062009
transmembrane receptor activity	0.565177620701637	bayes_pls_golite062009
testosterone 17-beta-dehydrogenase activity	0.532187027260366	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.51503848775098	bayes_pls_golite062009
protein binding	0.507836099271263	bayes_pls_golite062009
retinol binding	0.40116957175133	bayes_pls_golite062009
signal transducer activity	0.384212208916324	bayes_pls_golite062009
molecular transducer activity	0.384212208916324	bayes_pls_golite062009
3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity	0.320177384202291	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	0.233238483713519	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.0913823272876781	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [253-629]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YWPTPMEETK YLVGSSSRKR PSFKVSTKIE FPQSFEKMIV HTLSHKFRSA TRIVRAPLQL  60
   61 PIGPHQVLLK IIYAGVNASD VNFSSGRYFT GGSPKLPFDA GFEGVGLIAA VGESVKNLEV 120
  121 GTPAAVMTFG AYSEYMIVSS KHVLPVPRPD PEVVAMLTSG LTALIALEKA GQMKSGETVL 180
  181 VTAAAGGTGQ FAVQLAKLSG NKVIATCGGS EKAKLLKELG VDRVIDYKSE NIKTVLKKEF 240
  241 PKGVNIIYES VGGQMFDMCL NALAVYGRLI VIGMISQYQG EKGWEPAKYP GLCEKILAKS 300
  301 QTVAGFFLVQ YSQLWKQNLD KLFNLYALGK LKVGIDQKKF IGLNAVADAV EYLHSGKSTG 360
  361 KVVVCIDPAF EQKTSRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	2c0cA
Description:	Structure of the MGC45594 gene product
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: