| Protein: | RFA1A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 640 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFA1A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
563.0 | [0..1] | [640..55] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MPVSLTPNAI TAIHDGDVNL KPLLQVLEIK MIGRSQERSQ ERYRFLISDG VSAQHAMVAV 60
61 QLNDRVKSGQ FEKGSIVQLI DYICSDVKGR KLIVVLNMET IVQQSETIGN PTIFGETDTE 120
121 AQKTFSGTGN IPPPNRVVFN EPMVQHSVNR APPRGVNIQN QANNTPSFRP SVQPSYQPPA 180
181 SYRNHGPIMK
|
| Detection Method: |  |
| Confidence: | 32.522879 |
| Match: | 2b29A |
| Description: | N-terminal domain of the RPA70 subunit of human replication protein A. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 7.07761964836826 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 6.04637014849887 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 5.40477712257453 | bayes_pls_golite062009 |
| nucleic acid binding | 4.02967008021862 | bayes_pls_golite062009 |
| DNA binding | 3.62735703519187 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.59212997362902 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.53214384646348 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.25006883439646 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20239961025491 | bayes_pls_golite062009 |
| structural molecule activity | 2.07809455998137 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription factor activity | 1.05816813143865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.86170694706755 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.440977654731901 | bayes_pls_golite062009 |
| translation regulator activity | 0.41164963411369 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.378383789953688 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.360862776629591 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.325774164899685 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.31769813397725 | bayes_pls_golite062009 |
| RNA binding | 0.31028563542112 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.30211828233765 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226916777208049 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.0954216620147701 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
|
Region A: Residues: [191-442] |
1 11 21 31 41 51
| | | | | |
1 NEAPARVIPI AALNPYQGRW AIKARVTAKG DIRRYNNAKG DGKVFSFDLL DYDGGEIRVT 60
61 CFNALVDRFY DVTEVGKVYL ISKGSLKPAQ KNFNHLKNEW EIFLESTSTV ELCPDEDGSI 120
121 PKQQFSFRPI SDIENAENNT ILDVIGVVTS VNPSVPILRK NGMETHRRIL NLKDESGKAV 180
181 EVTLWGEFCN RDGRQLEEMV DSAFHPVLAI KAGKVSDFSG KSVGTISSTQ LFINPDFPEA 240
241 HKLRTWFDYG GK
|
| Detection Method: | |
| Confidence: | 58.522879 |
| Match: | 1jmcA |
| Description: | Replication protein A 70 KDa subunit (RPA70) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 7.07761964836826 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 6.04637014849887 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 5.40477712257453 | bayes_pls_golite062009 |
| nucleic acid binding | 4.02967008021862 | bayes_pls_golite062009 |
| DNA binding | 3.62735703519187 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.59212997362902 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.53214384646348 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.25006883439646 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20239961025491 | bayes_pls_golite062009 |
| structural molecule activity | 2.07809455998137 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription factor activity | 1.05816813143865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.86170694706755 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.440977654731901 | bayes_pls_golite062009 |
| translation regulator activity | 0.41164963411369 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.378383789953688 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.360862776629591 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.325774164899685 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.31769813397725 | bayes_pls_golite062009 |
| RNA binding | 0.31028563542112 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.30211828233765 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226916777208049 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.0954216620147701 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
|
Region A: Residues: [443-640] |
1 11 21 31 41 51
| | | | | |
1 DTASFSISRD TMPGGVSRNE IRKNVSQIKE EGLGRSDKPD WITVKATISF IKTDSFCYTA 60
61 CPLMIGDKQC NKKVTRSGTN RWLCDRCNQE SDECDYRYLL QVQIQDHTGL TWITAFQETG 120
121 EEIMGCPAKK LYAMKYELEK EEEFAEIVRD RLFHQYMLKL KIKEESYGDE QRVKMTVVKV 180
181 DKVNYTSESK YMLDLLVR
|
| Detection Method: | |
| Confidence: | 46.522879 |
| Match: | 1l1oC |
| Description: | Replication protein A 70 KDa subunit (RPA70) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 7.07761964836826 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 6.04637014849887 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 5.40477712257453 | bayes_pls_golite062009 |
| nucleic acid binding | 4.02967008021862 | bayes_pls_golite062009 |
| DNA binding | 3.62735703519187 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.59212997362902 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.53214384646348 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.25006883439646 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20239961025491 | bayes_pls_golite062009 |
| structural molecule activity | 2.07809455998137 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription factor activity | 1.05816813143865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.86170694706755 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.440977654731901 | bayes_pls_golite062009 |
| translation regulator activity | 0.41164963411369 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.378383789953688 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.360862776629591 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.325774164899685 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.31769813397725 | bayes_pls_golite062009 |
| RNA binding | 0.31028563542112 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.30211828233765 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226916777208049 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.0954216620147701 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
