| Protein: | SYKM_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 602 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYKM_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
534.0 | [0..70] | [601..1] |
|
Region A: Residues: [1-602] |
1 11 21 31 41 51
| | | | | |
1 MEALKVWSLT ATPLKQLLRL SSSSTRLATT IYGRRSYHLS PALRCASAAS SSSSSATTAE 60
61 TSKPSGRNRR SASSSNSTSD REAIRSIRLK KVEELRGQGL EPYAYKWEKS HSANQLQEIY 120
121 KHLANGEESD NEIDCVSIAG RVVARRAFGK LAFLTLRDDS GTIQLYCEKE RLSDDQFEQL 180
181 KQFIDIGDIL GASGSMKRTE KGELSICVNS FSILTKSLLP LPDKYHGLTD IDKRYRQRYV 240
241 DMIANPEVAD VFRRRAKIVS EIRKTVESFG YLEVETPVLQ GAAGGAEARP FVTFHNSLGR 300
301 DLYLRIATEL HLKRMLVGGF EKVYEIGRIF RNEGISTRHN PEFTTIEMYE AYSDYHSMMD 360
361 MAELIVTQCS MAVNGKLTID YQGTEICLER PWRRETMHNL VKEITGINFS ELGEDLGNAK 420
421 DTVLLALQDV LEPKDKSGIR ACSSLGHLLN EIFEVVVEPK LVQPTFVLDY PIEISPLAKP 480
481 HRGNAGLTER FELFICGREM ANAFSELTDP VDQRTRLEEQ VRQHNAKRAE AVRESPEPNA 540
541 KKDDDDDESY EVTLDEDFLT ALEYGMPPAS GMGLGIDRLV MLLTNSASIR DVIAFPVLKL 600
601 QQ
|
| Detection Method: |  |
| Confidence: | 150.0 |
| Match: | 1e1oA |
| Description: | Lysyl-tRNA synthetase (LysRS) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| lysine-tRNA ligase activity | 5.79033103181143 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 4.71689802574628 | bayes_pls_golite062009 |
| nucleic acid binding | 3.89165617439497 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 3.53864660125764 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 3.53864660125764 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 3.52777284894652 | bayes_pls_golite062009 |
| DNA binding | 3.38561002225202 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 2.99105702052936 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| ligase activity | 2.56279938346489 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 2.46505535069103 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.43759174701552 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 2.29229136935761 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 2.18642354927 | bayes_pls_golite062009 |
| structural molecule activity | 2.08258913217268 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 1.82594054955281 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.72215103383322 | bayes_pls_golite062009 |
| transcription regulator activity | 1.69669059514663 | bayes_pls_golite062009 |
| translation regulator activity | 1.46320772716954 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.40718318783582 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.28199205469179 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.97496043954059 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.96756670903925 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 0.921492123574877 | bayes_pls_golite062009 |
| transcription factor activity | 0.859071050218437 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.77755643935497 | bayes_pls_golite062009 |
| ribonuclease activity | 0.702449673647117 | bayes_pls_golite062009 |
| RNA binding | 0.18502033889261 | bayes_pls_golite062009 |
| protein binding | 0.152645195799531 | bayes_pls_golite062009 |
| nuclease activity | 0.111225677144242 | bayes_pls_golite062009 |
