| Protein: | DPOLA_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1492 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPOLA_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
1097.0 | [0..2] | [1492..5] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MSGDNSTETG RRRSRGAEAS SRKDTLERLK AIRQGGIRSA SGGGYDIRLQ KPIFDTVDDE 60
61 EYDALVSRRR EEARGFVVED GEGGDLGYLD EGEEEDWSKP SGPESTDESD DGGRFSGRLK 120
121 KKKKGKEQTQ QPQVKKVNPA LKAAATI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [148-260] |
1 11 21 31 41 51
| | | | | |
1 TGEGRLSSMF TSSSFKKVKE TDKAQYEGIL DEIIAQVTPD ESDRKKHTRR KLPGTVPVTI 60
61 FKNKKLFSVA SSMGMKESEP TPSTYEGDSV SMDNELMKEE DMKESEVIPS ETM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [261-340] |
1 11 21 31 41 51
| | | | | |
1 ELLGSDIVKE DGSNKIRKTE VKSELGVKEV FTLNATIDMK EKDSALSATA GWKEAMGKVG 60
61 TENGALLGSS SEGKTEFDLD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [341-1303] |
1 11 21 31 41 51
| | | | | |
1 ADGSLRFFIL DAYEEAFGAS MGTIYLFGKV KMGDTYKSCC VVVKNIQRCV YAIPNDSIFP 60
61 SHELIMLEQE VKDSRLSPES FRGKLHEMAS KLKNEIAQEL LQLNVSNFSM APVKRNYAFE 120
121 RPDVPAGEQY VLKINYSFKD RPLPEDLKGE SFSALLGSHT SALEHFILKR KIMGPCWLKI 180
181 SSFSTCSPSE GVSWCKFEVT VQSPKDITIL VSEEKVVHPP AVVTAINLKT IVNEKQNISE 240
241 IVSASVLCFH NAKIDVPMPA PERKRSGILS HFTVVRNPEG TGYPIGWKKE VSDRNSKNGC 300
301 NVLSIENSER ALLNRLFLEL NKLDSDILVG HNISGFDLDV LLQRAQACKV QSSMWSKIGR 360
361 LKRSFMPKLK GNSNYGSGAT PGLMSCIAGR LLCDTDLCSR DLLKEVSYSL TDLSKTQLNR 420
421 DRKEIAPNDI PKMFQSSKTL VELIECGETD AWLSMELMFH LSVLPLTLQL TNISGNLWGK 480
481 TLQGARAQRI EYYLLHTFHS KKFILPDKIS QRMKEIKSSK RRMDYAPEDR NVDELDADLT 540
541 LENDPSKGSK TKKGPAYAGG LVLEPKRGLY DKYVLLLDFN SLYPSIIQEY NICFTTIPRS 600
601 EDGVPRLPSS QTPGILPKLM EHLVSIRKSV KLKMKKETGL KYWELDIRQQ ALKLTANSMY 660
661 GCLGFSNSRF YAKPLAELIT LQGRDILQRT VDLVQNHLNL EVIYGDTDSI MIHSGLDDIE 720
721 EVKAIKSKVI QEVNKKYRCL KIDCDGIYKR MLLLRKKKYA AVKLQFKDGK PCEDIERKGV 780
781 DMVRRDWSLL SKEIGDLCLS KILYGGSCED VVEAIHNELM KIKEEMRNGQ VALEKYVITK 840
841 TLTKPPAAYP DSKSQPHVQV ALRMRQRGYK EGFNAKDTVP YIICYEQGNA SSASSAGIAE 900
901 RARHPDEVKS EGSRWLVDID YYLAQQIHPV VSRLCAEIQG TSPERLAECL GLDPSKYRSK 960
961 SND
|
| Detection Method: | |
| Confidence: | 149.0 |
| Match: | 1tgoA |
| Description: | Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA primase activity | 8.57378684936335 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 6.156872069104 | bayes_pls_golite062009 |
| DNA polymerase activity | 6.10801780003354 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 4.59418010473269 | bayes_pls_golite062009 |
| ribonuclease activity | 2.66669472409706 | bayes_pls_golite062009 |
| DNA binding | 2.53092801704688 | bayes_pls_golite062009 |
| nucleic acid binding | 2.33765586478028 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3098494148191 | bayes_pls_golite062009 |
| RNA polymerase activity | 2.29514625858236 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 2.29514625858236 | bayes_pls_golite062009 |
| binding | 1.83109253387887 | bayes_pls_golite062009 |
| exonuclease activity | 1.68989335095363 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.44884785815263 | bayes_pls_golite062009 |
| exoribonuclease activity | 1.41353777396851 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 1.33509846387956 | bayes_pls_golite062009 |
| transcription factor activity | 1.09234244981794 | bayes_pls_golite062009 |
| damaged DNA binding | 1.08077297289305 | bayes_pls_golite062009 |
| catalytic activity | 1.04899053677564 | bayes_pls_golite062009 |
| endonuclease activity | 0.991569665925888 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.98331180621651 | bayes_pls_golite062009 |
| chromatin binding | 0.953917901573139 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.78558451404229 | bayes_pls_golite062009 |
| transferase activity | 0.784455099927681 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.708753843279937 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.598360955770972 | bayes_pls_golite062009 |
| 0.49473250705373 | bayes_pls_golite062009 | |
| endodeoxyribonuclease activity | 0.48776342704945 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.433956339585542 | bayes_pls_golite062009 |
| protein binding | 0.354190470641287 | bayes_pls_golite062009 |
| nuclease activity | 0.332024848299731 | bayes_pls_golite062009 |
| DNA helicase activity | 0.283883977748512 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.221046452145313 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.206750180223289 | bayes_pls_golite062009 |
| single-stranded DNA specific exodeoxyribonuclease activity | 0.19596408995795 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 0.154583332107704 | bayes_pls_golite062009 |
| transcription activator activity | 0.0244224367660355 | bayes_pls_golite062009 |
| endoribonuclease activity | 0.016619833072142 | bayes_pls_golite062009 |
|
Region A: Residues: [1304-1492] |
1 11 21 31 41 51
| | | | | |
1 ATSSDPSTSL LFATSDEESK KPATPETEES DSTFWLKLHC PKCQQEDSTG IISPAMIANQ 60
61 VKRQIDGFVS MYYKGIMVCE DESCKHTTRS PNFRLLGERE RGTVCPNYPN CNGTLLRKYT 120
121 EADLYKQLSY FCHILDTQCS LEKMDVGVRI QVEKAMTKIR PAVKSAAAIT RSSRDRCAYG 180
181 WMQLTDIVI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
